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Report for CCDS15448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15448.1 Public Mus musculus 1 Mael 23 108 98 CCDS HistoryNCBI Gene:98558Re-query CCDS DB by CCDS ID:15448.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038782.3 ENSMUSP00000045828.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038782.3Link to Ensembl Protein Viewer:ENSMUSP00000045828.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038782Re-query CCDS DB by Protein ID:ENSMUSP00000045828
Original member Current member NCBI NM_175296.4 NP_780505.1 Accepted alive Link to Nucleotide Sequence:NM_175296.4Link to Protein Sequence:NP_780505.1Re-query CCDS DB by Nucleotide ID:NM_175296Re-query CCDS DB by Protein ID:NP_780505Link to BLAST:NP_780505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780505.1 434 Q8BVN9 434 100% 0 0

Chromosomal Locations for CCDS 15448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166201548 166201735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166202275 166202350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166204790 166204922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166205853 166205915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166225590 166225731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166225837 166225891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166226566 166226690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166234165 166234206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166235401 166235556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166236873 166236972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166238263 166238355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166238535 166238666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGCCCAACCGCAGGGCCAGCCGCAATGCCTACTATTTCTTCGTACAGGAGAAGATTCCCGAACTGCGCC
GGCGAGGCCTGCCGGTGGCCCGCGTGGCAGACGCCATCCCCTACTGCTCGGCCGACTGGGCGCTCTTGAG
GGAGGATGAGAAGGAGAAATACTCAGAAATGGCTCGAGAGTGGAGAGCAGCCCAGGGAAAGGATTCTGGG
CCTTCAGAGAAGCAGAAACTTGTATCTACACCACTGAGGAGGCCAGGCATGCTTGTACCAAAACCAAGTA
TTTCTCCCCCTGATATGTCAAATTTATCTATAAAAAGTGATCAAGCTCTCCTTGGAGGCATTTTTTATTT
TCTGAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTGGC
TGTGTTAAATACTCCCTCCAGGAAGGTATTATGGCAGATTTCCACAGTTTTATCCATCCAGGTGAAATTC
CACGAGGATTTCGATTCCATTGCCAGGCTGCAAGTGATTCTAGTCACAAGATTCCTATTTCAAACTTTGA
ATTCGGGCATGACCAAGCAACTGTGTTACAAAACCTCTATAAATTTATACATCCAAACCCAGGGAACTGG
CCACCTATTTACTGCAAGTCTGATGATAGAGCCAGAGTCAACTGGTGTTTGAAGCGTATGGAGCGGGCAT
CAGAAATAAGGCAAGATCTAGAACTTCTCACTGTAGAGGACCTTGTAGTTGGGATCTACCAGCAAAAATT
CCTCAAGGAGCCCTCTAAGACCTGGGTGCGAAGCCTCCTAGATGTGGCCATGTGGGACTATTCTAGCAAC
ACGAGGTGCAAATGGCATGAAGAAAATGATATTCTCTTCTGTGCTTTAGCTGTTTGCAAGAAAATCGCGT
ACTGCATCAGTAATTCTCTAGCCACTCTGTTTGGAATCCAGCTCACTGGAGCTCATGTACCACTACAAGA
CTATGAGGCCAGCAACAGTGTGACACCCAAAATGGTTGTATTGGATGCAGGGCGGTACCAGAAGCTAAGA
GTTGAGAGTCCAGGATTCTGTCATTTCAACTCTTACAATCAGGAACAAAGATCAAATACATCTACTGGTT
ATTATCCATCTGGGGTGAAAATTTCGGGCCCTCACAGCAGTGTTCGCGGAAGAGGAATTACCCGCTTACT
AGAGAGCATCTCAAACTCCTCCAACAACATCCATAGATTCTCCAGCTGTGAGACTTCACTCTCACCTTAC
ACGCCCCAAAAAGATGGGTACAAACCTTTCTCCTCCTTTTCTTAA

Translation (434 aa):
MPNRRASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSADWALLREDEKEKYSEMAREWRAAQGKDSG
PSEKQKLVSTPLRRPGMLVPKPSISPPDMSNLSIKSDQALLGGIFYFLNIFSHGELPPHCEQRFLPCEIG
CVKYSLQEGIMADFHSFIHPGEIPRGFRFHCQAASDSSHKIPISNFEFGHDQATVLQNLYKFIHPNPGNW
PPIYCKSDDRARVNWCLKRMERASEIRQDLELLTVEDLVVGIYQQKFLKEPSKTWVRSLLDVAMWDYSSN
TRCKWHEENDILFCALAVCKKIAYCISNSLATLFGIQLTGAHVPLQDYEASNSVTPKMVVLDAGRYQKLR
VESPGFCHFNSYNQEQRSNTSTGYYPSGVKISGPHSSVRGRGITRLLESISNSSNNIHRFSSCETSLSPY
TPQKDGYKPFSSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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