NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14490.1 Public Homo sapiens X ARMCX2 24 110 108 CCDS HistoryNCBI Gene:9823Re-query CCDS DB by CCDS ID:14490.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330154.6 ENSP00000328631.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330154.6Link to Ensembl Protein Viewer:ENSP00000328631.2Re-query CCDS DB by Nucleotide ID:ENST00000330154Re-query CCDS DB by Protein ID:ENSP00000328631
Original member Current member EBI ENST00000328766.9 ENSP00000331662.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328766.9Link to Ensembl Protein Viewer:ENSP00000331662.5Re-query CCDS DB by Nucleotide ID:ENST00000328766Re-query CCDS DB by Protein ID:ENSP00000331662
Original member Current member EBI ENST00000356824.9 ENSP00000349281.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356824.9Link to Ensembl Protein Viewer:ENSP00000349281.4Re-query CCDS DB by Nucleotide ID:ENST00000356824Re-query CCDS DB by Protein ID:ENSP00000349281
Original member Current member NCBI NM_001282231.2 NP_001269160.1 Accepted alive Link to Nucleotide Sequence:NM_001282231.2Link to Protein Sequence:NP_001269160.1Re-query CCDS DB by Nucleotide ID:NM_001282231Re-query CCDS DB by Protein ID:NP_001269160Link to BLAST:NP_001269160.1
Original member Current member NCBI NM_014782.7 NP_055597.1 Accepted alive Link to Nucleotide Sequence:NM_014782.7Link to Protein Sequence:NP_055597.1Re-query CCDS DB by Nucleotide ID:NM_014782Re-query CCDS DB by Protein ID:NP_055597Link to BLAST:NP_055597.1
Original member Current member NCBI NM_177949.4 NP_808818.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177949.4Link to Protein Sequence:NP_808818.1Re-query CCDS DB by Nucleotide ID:NM_177949Re-query CCDS DB by Protein ID:NP_808818Link to BLAST:NP_808818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269160.1 632 Q7L311 632 100% 0 0
NP_055597.1 632 Q7L311 632 100% 0 0
NP_808818.1 632 Q7L311 632 100% 0 0

Chromosomal Locations for CCDS 14490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101655690 101657588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGAGCCGCGTTCGGGATGCTGGCTGTGTAGCGGCGGGGATAGTGATAGGGGCTGGTGCCTGGTACTGTG
TCTACAAATACACCAGGGGGAGAGACCAGACCAAGAAGAGAATGGCCAAGCCCAAAAACCGGGCTGTGGC
TGGGACTGGAGCCAGGGCTAGAGCTGGGCTAAGAGCCGGATTCACAATCGACCTTGGGTCAGGATTCAGT
CCCCCAACCCCAGTCCGTGCTGAAGCAGAGGACAGGGCCCAGGATGAAGCCTCTGCTCTGGACACAGTTG
GAGCTGAGGCAGTGGCCCCAGCTGCATCCAGCGCTGAGGCTCAGAGTGGGGCAGGCAGTCAGGCCCAAGA
GGCAGATGGAGCCGGGGTTGGGCCTAAGGCCGAATCAGTAGTTGGGGCTGCAATGGCTTCTGCAATAGCA
CCACCTCCCGGGGTGACAGAGGCCCTTGGGGCTGCAGAAGCCCCTGCAATGGCAGGGGCTCCCAAAGTGG
CAGAAGCTCCCAGAGAAGCGGAGACTTCCAGGGCAGCGGTGCCTCCTGGGACAGTGGTGCCTACCGAAGC
GGCAGCACCCACTGAGGTGACCGAGGGTCCTGGGGTAGCAGCACCTACCAAGGTAGCTGAAGCTCCCGGG
GTGGCATCGCCTACCGAGGCAGCTGAGGCTCCTGTGCCGGCAACGCCTACTGGGGCTGCAGCACCTACTG
GGGCTGCAGAGTCTCCTGGAACTTCTGGTTCCCCTAGAACAGCGGTGGTTCCTGGAACATCAGCTGCCAA
GAAAGCAACCCCTGGGGCTCACACTGGGGCTATACCGAAAGCCACATCAGCGACTGGAGCGGTACCCAAA
GGTGGAGGCAAGGGTGTAACCAGGTCCCGGAATGGGGGCAAGGGCAAGGGCAAGAAAAGCAAAGTTGAAG
TAGACGAACTGGGGATGGGCTTCCGTCCTGGAGATGGGGCTGCAGCAGCTGCTGCAGCCTCTGCTAATGG
CGGACAGGCTTTCCTGGCAGAGGTCCCTGATTCTGAGGAAGGGGAGTCCGGGTGGACTGACACAGAGTCA
GATTCAGACTCTGAGCCCGAGACCCAGCGCAGAGGGAGGGGAAGAAGACCCGTTGCCATGCAGAAGCGCC
CCTTTCCTTATGAAATTGATGAGATTCTGGGTGTCCGCGATCTCAGGAAGGTCCTTGCCTTGCTTCAGAA
ATCTGATGATCCTTTCATCCAACAGGTAGCTTTGCTCACTCTGAGCAACAATGCCAATTATTCATGCAAT
CAAGAGACAATCCGCAAATTGGGAGGCCTCCCAATTATTGCAAACATGATCAACAAAACTGATCCACACA
TTAAGGAAAAAGCCTTAATGGCCATGAATAACCTGAGTGAGAATTATGAAAATCAGGGCCGGCTTCAGGT
GTACATGAATAAAGTGATGGATGATATCATGGCCTCTAACCTGAACTCAGCAGTTCAAGTAGTTGGACTA
AAATTTCTAACAAACATGACTATTACTAATGACTACCAACACCTGCTTGTCAATTCCATTGCAAACTTTT
TCCGTTTGCTATCTCAGGGAGGTGGAAAAATCAAGGTTGAGATTTTGAAAATCCTTTCGAATTTTGCTGA
AAATCCAGATATGTTGAAGAAACTTCTCAGTACCCAAGTGCCAGCATCATTTAGTTCCCTCTATAATTCT
TACGTGGAATCAGAAATCCTTATTAATGCCCTTACTCTATTTGAGATTATCTATGACAATCTCAGAGCAG
AAGTGTTTAACTATAGAGAATTCAATAAAGGTTCCCTTTTTTACTTATGCACTACATCTGGAGTGTGTGT
TAAGAAAATTAGAGCCTTAGCAAATCACCATGACCTCTTAGTGAAAGTGAAAGTTATAAAACTAGTGAAC
AAATTCTGA

Translation (632 aa):
MSRVRDAGCVAAGIVIGAGAWYCVYKYTRGRDQTKKRMAKPKNRAVAGTGARARAGLRAGFTIDLGSGFS
PPTPVRAEAEDRAQDEASALDTVGAEAVAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIA
PPPGVTEALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPG
VASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPK
GGGKGVTRSRNGGKGKGKKSKVEVDELGMGFRPGDGAAAAAAASANGGQAFLAEVPDSEEGESGWTDTES
DSDSEPETQRRGRGRRPVAMQKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCN
QETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGL
KFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLSTQVPASFSSLYNS
YVESEILINALTLFEIIYDNLRAEVFNYREFNKGSLFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVN
KF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH