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Report for CCDS47542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47542.1 Public Homo sapiens 7 PHF14 24 110 108 CCDS HistoryNCBI Gene:9678Re-query CCDS DB by CCDS ID:47542.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403050.7 ENSP00000385795.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403050.7Link to Ensembl Protein Viewer:ENSP00000385795.3Re-query CCDS DB by Nucleotide ID:ENST00000403050Re-query CCDS DB by Protein ID:ENSP00000385795
Original member Current member NCBI NM_014660.4 NP_055475.2 Accepted alive Link to Nucleotide Sequence:NM_014660.4Link to Protein Sequence:NP_055475.2Re-query CCDS DB by Nucleotide ID:NM_014660Re-query CCDS DB by Protein ID:NP_055475Link to BLAST:NP_055475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055475.2 888 O94880-1 888 100% 0 0

Chromosomal Locations for CCDS 47542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 10974324 10974324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10974835 10974945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10982372 10983159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 10990703 10990847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11013747 11013906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11022868 11022979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11028681 11028818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11035640 11035786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11036418 11036688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11036985 11037091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11038760 11038855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11040672 11040775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11042683 11042814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11051612 11051780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11061791 11061841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11061964 11062085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 11102486 11102498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGATCGCAGCTCCAAGAGGAGGCAGGTGAAGCCTTTGGCAGCTTCTCTGCTGGAAGCTCTTGATTATG
ATAGTTCAGATGACAGTGATTTTAAAGTTGGAGATGCCTCAGATTCTGAAGGGAGTGGTAATGGAAGTGA
AGATGCTTCAAAGGACAGTGGAGAAGGTTCCTGTAGTGATTCTGAAGAAAATATTTTAGAAGAAGAACTG
AATGAAGATATTAAAGTAAAAGAAGAACAACTTAAAAATTCTGCAGAGGAAGAAGTACTATCATCAGAAA
AACAATTAATTAAAATGGAAAAGAAGGAAGAAGAAGAAAATGGAGAAAGACCTAGAAAGAAAAAGGAGAA
AGAGAAGGAAAAAGAAAAGGAAAAGGAGAAAGAGAAGGAAAGAGAGAAGGAAAAAGAAAAAGCAACAGTA
TCTGAGAATGTGGCTGCTTCTGCTGCTGCCACCACACCAGCCACAAGTCCTCCTGCTGTTAACACATCCC
CTTCTGTTCCCACTACGACAACCGCTACAGAGGAACAAGTCAGCGAGCCAAAAAAATGGAACCTTCGACG
AAACCGACCACTTCTGGATTTTGTGTCCATGGAAGAGCTGAATGACATGGATGACTATGACAGTGAGGAT
GACAATGATTGGCGACCTACTGTAGTAAAGAGAAAAGGGAGATCTGCGTCTCAGAAAGAGGGAAGTGATG
GAGACAATGAGGATGATGAAGATGAGGGAAGCGGGAGTGATGAAGACGAGAATGATGAAGGCAATGATGA
AGATCATAGTAGCCCTGCCAGTGAAGGGGGTTGCAAGAAGAAGAAGAGTAAAGTTCTTAGCAGAAACAGT
GCTGATGATGAGGAACTGACCAATGATAGCCTGACCCTATCTCAAAGCAAGAGTAATGAGGACTCGCTGA
TTCTTGAGAAGAGTCAAAACTGGAGCTCTCAAAAAATGGACCATATTCTGATTTGCTGTGTTTGTCTGGG
AGATAATAGTGAGGACGCTGATGAAATAATTCAGTGTGACAATTGTGGCATTACAGTCCATGAAGGTTGT
TATGGAGTTGATGGAGAGAGTGACTCTATTATGAGTTCAGCTTCTGAAAACTCCACTGAACCTTGGTTTT
GTGATGCCTGTAAATGTGGTGTTTCTCCTAGCTGTGAACTGTGTCCTAATCAGGATGGAATTTTCAAGGA
GACAGATGCTGGAAGATGGGTTCATATTGTTTGTGCCCTGTATGTTCCTGGAGTAGCCTTTGGAGATATT
GACAAATTACGACCAGTAACACTAACGGAAATGAACTATTCCAAATATGGTGCCAAGGAGTGTAGCTTTT
GTGAAGACCCTCGCTTTGCTAGAACTGGGGTTTGCATTAGCTGTGATGCAGGGATGTGCAGAGCCTATTT
CCATGTGACCTGTGCTCAAAAGGAAGGTCTGCTTTCAGAGGCAGCGGCGGAAGAGGATATAGCAGATCCA
TTCTTTGCTTATTGTAAGCAACATGCAGATAGGTTAGACAGAAAGTGGAAGAGAAAAAACTACTTGGCTC
TACAGTCCTATTGTAAAATGTCTTTGCAAGAGAGAGAGAAGCAACTATCACCAGAAGCACAGGCAAGGAT
CAATGCCCGGCTTCAGCAGTATCGTGCCAAAGCAGAACTAGCTCGATCTACCAGACCCCAGGCCTGGGTT
CCAAGGGAAAAATTGCCCAGACCACTCACCAGCAGTGCTTCAGCTATTCGTAAACTTATGCGGAAAGCAG
AACTCATGGGGATCAGTACAGATATCTTTCCAGTGGACAATTCAGATACTAGTTCTAGTGTGGATGGAAG
GAGAAAACATAAGCAACCAGCTCTCACTGCAGATTTTGTGAATTATTATTTTGAGAGAAATATGCGCATG
ATTCAAATTCAGGAAAATATGGCTGAACAAAAGAATATAAAAGATAAATTAGAGAATGAACAAGAAAAGC
TTCATGTAGAATATAATAAGCTATGTGAATCTTTAGAAGAACTACAAAACCTGAATGGAAAACTTCGAAG
TGAAGGACAAGGAATATGGGCTTTACTAGGCAGAATCACAGGGCAGAAGTTGAATATACCGGCAATTTTG
CGAGCACCCAAGGAGAGAAAACCAAGTAAAAAAGAAGGAGGCACACAAAAGACATCTACTCTTCCTGCAG
TACTTTATAGTTGTGGGATTTGTAAGAAGAACCATGATCAGCATCTTCTTTTATTGTGTGATACCTGTAA
ACTACATTACCATCTTGGATGTCTGGATCCTCCTCTTACAAGGATGCCAAGAAAGACCAAAAACAGTTAT
TGGCAGTGCTCGGAATGTGACCAGGCAGGGAGCAGTGACATGGAAGCAGATATGGCCATGGAAACCCTAC
CAGATGGAACCAAACGATCAAGGAGGCAGATTAAGGAACCAGTGAAATTTGTTCCACAGGATGTGCCACC
AGAACCCAAGAAGATTCCGATAAGAAACACGAGAACCAGAGGACGAAAACGAAGCTTCGTTCCTGAGGAA
GAAAAACATGAGGAAAGAGTTCCTAGAGAGAGAAGACAAAGACAGTCTGTGTTGCAAAAGAAGCCCAAGG
CTGAAGATTTAAGAACTGAATGTGCAACTTGCAAGGGAACTGGAGACAATGAAAATCTTGTCAGATACCC
TTCATGA

Translation (888 aa):
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDASKDSGEGSCSDSEENILEEEL
NEDIKVKEEQLKNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATV
SENVAASAAATTPATSPPAVNTSPSVPTTTTATEEQVSEPKKWNLRRNRPLLDFVSMEELNDMDDYDSED
DNDWRPTVVKRKGRSASQKEGSDGDNEDDEDEGSGSDEDENDEGNDEDHSSPASEGGCKKKKSKVLSRNS
ADDEELTNDSLTLSQSKSNEDSLILEKSQNWSSQKMDHILICCVCLGDNSEDADEIIQCDNCGITVHEGC
YGVDGESDSIMSSASENSTEPWFCDACKCGVSPSCELCPNQDGIFKETDAGRWVHIVCALYVPGVAFGDI
DKLRPVTLTEMNYSKYGAKECSFCEDPRFARTGVCISCDAGMCRAYFHVTCAQKEGLLSEAAAEEDIADP
FFAYCKQHADRLDRKWKRKNYLALQSYCKMSLQEREKQLSPEAQARINARLQQYRAKAELARSTRPQAWV
PREKLPRPLTSSASAIRKLMRKAELMGISTDIFPVDNSDTSSSVDGRRKHKQPALTADFVNYYFERNMRM
IQIQENMAEQKNIKDKLENEQEKLHVEYNKLCESLEELQNLNGKLRSEGQGIWALLGRITGQKLNIPAIL
RAPKERKPSKKEGGTQKTSTLPAVLYSCGICKKNHDQHLLLLCDTCKLHYHLGCLDPPLTRMPRKTKNSY
WQCSECDQAGSSDMEADMAMETLPDGTKRSRRQIKEPVKFVPQDVPPEPKKIPIRNTRTRGRKRSFVPEE
EKHEERVPRERRQRQSVLQKKPKAEDLRTECATCKGTGDNENLVRYPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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