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Report for CCDS6217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6217.1 Public Homo sapiens 8 JPH1 24 110 108 CCDS HistoryNCBI Gene:56704Re-query CCDS DB by CCDS ID:6217.1Re-query CCDS DB by GeneID:56704See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342232.5 ENSP00000344488.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342232.5Link to Ensembl Protein Viewer:ENSP00000344488.4Re-query CCDS DB by Nucleotide ID:ENST00000342232Re-query CCDS DB by Protein ID:ENSP00000344488
Original member Current member NCBI NM_001317830.2 NP_001304759.1 Accepted alive Link to Nucleotide Sequence:NM_001317830.2Link to Protein Sequence:NP_001304759.1Re-query CCDS DB by Nucleotide ID:NM_001317830Re-query CCDS DB by Protein ID:NP_001304759Link to BLAST:NP_001304759.1
Original member Current member NCBI NM_001363050.1 NP_001349979.1 Accepted alive Link to Nucleotide Sequence:NM_001363050.1Link to Protein Sequence:NP_001349979.1Re-query CCDS DB by Nucleotide ID:NM_001363050Re-query CCDS DB by Protein ID:NP_001349979Link to BLAST:NP_001349979.1
Original member Current member NCBI NM_001363051.1 NP_001349980.1 Accepted alive Link to Nucleotide Sequence:NM_001363051.1Link to Protein Sequence:NP_001349980.1Re-query CCDS DB by Nucleotide ID:NM_001363051Re-query CCDS DB by Protein ID:NP_001349980Link to BLAST:NP_001349980.1
Original member Current member NCBI NM_020647.4 NP_065698.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020647.4Link to Protein Sequence:NP_065698.1Re-query CCDS DB by Nucleotide ID:NM_020647Re-query CCDS DB by Protein ID:NP_065698Link to BLAST:NP_065698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304759.1 661 Q9HDC5 661 100% 0 0
NP_001349979.1 661 Q9HDC5 661 100% 0 0
NP_001349980.1 661 Q9HDC5 661 100% 0 0
NP_065698.1 661 Q9HDC5 661 100% 0 0

Chromosomal Locations for CCDS 6217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 74237223 74237303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74244529 74245175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74259385 74259503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74314861 74315620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74320909 74321287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGACGGGCGGAAGGTTCGACTTCGACGATGGCGGCACCTACTGCGGCGGCTGGGAGGAGGGCAAGGCGC
ACGGGCATGGCATCTGCACGGGGCCCAAGGGCCAGGGCGAGTACTCGGGCTCCTGGTCGCACGGCTTCGA
GGTGGTCGGAGGCTACACCTGGCCCAGCGGCAACACCTACCAGGGCTACTGGGCGCAGGGCAAGCGGCAC
GGGCTGGGGGTGGAGACGAAGGGCAAGTGGATGTACCGGGGGGAGTGGTCACATGGTTTCAAGGGGCGCT
ACGGGGTCCGGCAGAGCCTGTGCACCCCCGCTCGCTACGAGGGTACCTGGAGTAACGGGCTGCAAGACGG
GTACGGCGTGGAGACCTACGGGGACGGAGGTACCTACCAGGGCCAGTGGGCCGGAGGCATGCGGCATGGC
TACGGCGTGCGCCAGAGCGTGCCCTACGGCATGGCCACGGTGATCCGCTCACCGCTGCGTACCTCGCTGG
CCTCGCTGCGCAGCGAGCAGAGCAATGGCAGCGTGCTCCACGACGCCGCAGCCGCCGCCGACAGCCCGGC
CGGCACCCGCGGCGGTTTCGTGCTCAACTTCCACGCAGACGCTGAGCTAGCGGGCAAGAAGAAGGGCGGC
CTCTTCCGGAGGGGCTCCCTTCTTGGAAGCATGAAACTTCGCAAGTCCGAATCCAAGTCTTCCATCTCGA
GCAAGCGCAGCTCTGTCCGCAGCGACGCGGCCATGAGCAGAATTAGTTCCAGCGATGCCAACTCCACGAT
CAGCTTTGGCGATGTAGATTGTGATTTTTGCCCGGTGGAAGACCACGTGGACGCCACCACCACGGAAACC
TACATGGGCGAGTGGAAGAACGACAAGCGCAACGGCTTCGGCGTTAGCGAGCGCTCCAATGGCATGAAGT
ATGAAGGGGAGTGGGCAAATAACAAGAGGCATGGATATGGCTGTACCGTGTTTCCTGACGGCTCCAAAGA
AGAGGGAAAATACAAAAATAATATTCTGGTCCGTGGGATAAGGAAGCAGCTTATACCAATAAGACATACA
AAAACTAGGGAGAAGGTGGACAGAGCAATTGAAGGCGCCCAAAGGGCAGCTGCCATGGCCAGAACCAAAG
TGGAAATAGCAAATTCAAGGACTGCACATGCCAGAGCGAAGGCCGATGCCGCCGACCAGGCCGCGCTGGC
CGCTCGCCAGGAGTGCGACATCGCGAGAGCTGTGGCCAGGGAGCTGTCACCTGATTTCTACCAACCAGGC
CCTGATTACGTCAAACAGAGATTTCAGGAAGGTGTAGATGCTAAAGAAAATCCAGAAGAAAAGGTACCAG
AAAAGCCACCTACACCAAAGGAGTCTCCTCATTTTTATCGCAAAGGCACGACACCCCCAAGATCTCCTGA
GGCAAGTCCCAAACACAGCCACTCTCCTGCTTCCTCCCCAAAGCCCCTGAAGAAGCAAAACCCCAGCTCA
GGGGCGAGACTCAACCAAGACAAAAGGAGTGTGGCTGATGAGCAGGTGACGGCCATTGTCAATAAGCCCT
TGATGTCAAAGGCTCCCACGAAGGAGGCAGGAGCGGTTGTGCCCCAGTCCAAGTACTCTGGCCGCCACCA
CATCCCCAACCCCAGTAACGGGGAGCTGCATTCTCAGTATCACGGCTACTACGTGAAGCTGAACGCCCCC
CAGCACCCTCCAGTAGACGTGGAGGACGGCGATGGATCCAGCCAGTCTTCCTCAGCACTGGTGCACAAGC
CATCCGCTAACAAGTGGAGTCCCTCCAAATCTGTGACAAAACCAGTTGCCAAAGAAAGCAAAGCTGAGCC
AAAAGCTAAGAAGTCTGAACTTGCTATACCAAAGAATCCAGCAAGCAACGATTCATGCCCTGCTTTGGAA
AAAGAAGCCAATTCAGGCCCTAATTCAATCATGATTGTCCTTGTCATGCTGTTGAATATCGGGTTGGCCA
TTCTTTTTGTTCACTTTCTAACTTGA

Translation (661 aa):
MTGGRFDFDDGGTYCGGWEEGKAHGHGICTGPKGQGEYSGSWSHGFEVVGGYTWPSGNTYQGYWAQGKRH
GLGVETKGKWMYRGEWSHGFKGRYGVRQSLCTPARYEGTWSNGLQDGYGVETYGDGGTYQGQWAGGMRHG
YGVRQSVPYGMATVIRSPLRTSLASLRSEQSNGSVLHDAAAAADSPAGTRGGFVLNFHADAELAGKKKGG
LFRRGSLLGSMKLRKSESKSSISSKRSSVRSDAAMSRISSSDANSTISFGDVDCDFCPVEDHVDATTTET
YMGEWKNDKRNGFGVSERSNGMKYEGEWANNKRHGYGCTVFPDGSKEEGKYKNNILVRGIRKQLIPIRHT
KTREKVDRAIEGAQRAAAMARTKVEIANSRTAHARAKADAADQAALAARQECDIARAVARELSPDFYQPG
PDYVKQRFQEGVDAKENPEEKVPEKPPTPKESPHFYRKGTTPPRSPEASPKHSHSPASSPKPLKKQNPSS
GARLNQDKRSVADEQVTAIVNKPLMSKAPTKEAGAVVPQSKYSGRHHIPNPSNGELHSQYHGYYVKLNAP
QHPPVDVEDGDGSSQSSSALVHKPSANKWSPSKSVTKPVAKESKAEPKAKKSELAIPKNPASNDSCPALE
KEANSGPNSIMIVLVMLLNIGLAILFVHFLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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