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Report for CCDS12257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12257.1 Public Homo sapiens 19 RAB3D 24 110 108 CCDS HistoryNCBI Gene:9545Re-query CCDS DB by CCDS ID:12257.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12257.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222120.8 ENSP00000222120.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222120.8Link to Ensembl Protein Viewer:ENSP00000222120.2Re-query CCDS DB by Nucleotide ID:ENST00000222120Re-query CCDS DB by Protein ID:ENSP00000222120
Original member Current member EBI ENST00000589655.1 ENSP00000466000.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589655.1Link to Ensembl Protein Viewer:ENSP00000466000.1Re-query CCDS DB by Nucleotide ID:ENST00000589655Re-query CCDS DB by Protein ID:ENSP00000466000
Original member Current member NCBI NM_004283.4 NP_004274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004283.4Link to Protein Sequence:NP_004274.1Re-query CCDS DB by Nucleotide ID:NM_004283Re-query CCDS DB by Protein ID:NP_004274Link to BLAST:NP_004274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004274.1 219 O95716 219 100% 0 0

Chromosomal Locations for CCDS 12257.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11325398 11325585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11335447 11335571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11335665 11335783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11337172 11337399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCATCAGCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCA
AACTGCTACTGATAGGCAACAGCAGTGTGGGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTT
CACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACCGTCTACCGCCATGACAAGAGG
ATCAAGCTGCAGATCTGGGACACAGCGGGCCAGGAGCGCTACCGCACCATCACCACGGCCTACTACCGGG
GAGCCATGGGCTTCCTGCTCATGTATGACATCGCCAATCAGGAATCCTTTGCCGCTGTGCAGGACTGGGC
CACGCAAATCAAGACCTACTCCTGGGACAACGCCCAGGTCATCCTGGTGGGGAACAAGTGTGACCTGGAG
GACGAACGTGTTGTGCCTGCTGAGGATGGCCGGAGGCTCGCCGACGACCTTGGTTTCGAGTTCTTTGAAG
CCAGTGCCAAGGAGAACATCAATGTGAAGCAGGTCTTCGAGCGCCTGGTGGATGTCATCTGCGAGAAGAT
GAACGAGTCCCTGGAACCCAGCTCCAGCTCAGGCAGCAACGGGAAAGGCCCGGCCGTGGGGGATGCTCCA
GCCCCCCAGCCCAGCAGCTGCAGCTGCTAG

Translation (219 aa):
MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR
IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE
DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAVGDAP
APQPSSCSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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