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Report for CCDS52342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52342.1 Public Mus musculus 7 Trim34a 23 108 98 CCDS HistoryNCBI Gene:94094Re-query CCDS DB by CCDS ID:52342.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060315.11 ENSMUSP00000055058.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060315.11Link to Ensembl Protein Viewer:ENSMUSP00000055058.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060315Re-query CCDS DB by Protein ID:ENSMUSP00000055058
Original member Current member EBI ENSMUST00000106848.7 ENSMUSP00000102461.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106848.7Link to Ensembl Protein Viewer:ENSMUSP00000102461.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106848Re-query CCDS DB by Protein ID:ENSMUSP00000102461
Original member Current member EBI ENSMUST00000106849.8 ENSMUSP00000102462.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106849.8Link to Ensembl Protein Viewer:ENSMUSP00000102462.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106849Re-query CCDS DB by Protein ID:ENSMUSP00000102462
Original member NCBI NM_001357679.1 NP_001344608.1 Updated not alive Link to Nucleotide Sequence:NM_001357679.1Link to Protein Sequence:NP_001344608.1Re-query CCDS DB by Nucleotide ID:NM_001357679Re-query CCDS DB by Protein ID:NP_001344608
Current member NCBI NM_001357679.2 NP_001344608.1 Accepted alive Link to Nucleotide Sequence:NM_001357679.2Link to Protein Sequence:NP_001344608.1Re-query CCDS DB by Nucleotide ID:NM_001357679Re-query CCDS DB by Protein ID:NP_001344608Link to BLAST:NP_001344608.1
Original member NCBI NM_030684.3 NP_109609.2 Updated not alive Link to Nucleotide Sequence:NM_030684.3Link to Protein Sequence:NP_109609.2Re-query CCDS DB by Nucleotide ID:NM_030684Re-query CCDS DB by Protein ID:NP_109609
Current member NCBI NM_030684.4 NP_109609.2 Accepted alive Link to Nucleotide Sequence:NM_030684.4Link to Protein Sequence:NP_109609.2Re-query CCDS DB by Nucleotide ID:NM_030684Re-query CCDS DB by Protein ID:NP_109609Link to BLAST:NP_109609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344608.1 485 Q99PP6-1 485 100% 0 0
NP_109609.2 485 Q99PP6-1 485 100% 0 0

Chromosomal Locations for CCDS 52342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104247731 104248150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104248687 104248782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104249395 104249625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104259413 104259435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104260118 104260218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104260478 104260504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104260891 104261450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCCTCAACAGGTCTGACGAATATACAGGAGAAGACCACTTGCCCTGTCTGCCAAGAGCTTTTGACCA
AAGCCCTGAGTCTAGGCTGTGGCCACCGTGTATGCCAAGCCTGTCTCATCACGAAGAAGAATGCAGTGAT
CAACCCCAGAGAGAAAAGCAGCTGTCCTGTGTGTGGTACTAGATTCTCGTTGGAAAATCTACAGGCTAAT
AAACATCTGGCAAATGTAGTAGAGAGACTCGGGGAGGTTAAATTGAAGCCTGACATTGGGACAAAGAGAG
ATCTCTGTGTACACCATGGAGAGAAGCTCCTTCTCTTCTGTAAGGAGGACAAGAAGGCCATTTGCTGGGT
TTGTGAGCGTTCTCAGGAGCATCGTGGTCACCACACATTCCTCTGGGAGGAAGCAGTCAGGGAATGTCAG
GAGAATCTCCAGAAAGCTCTCACGAGGCTGAGGAAGGAGCAGGAGAAGGTGGAGACATTGGAAGCTGACA
TCAAAGAAGACAGACTTTCCTGGAAGTGCCAGGTCCAGACTGAGAGACAAAGGATTCAAACAGGCTTTAA
TCAGCTTAGAAGAATCCTGGACAAGGAGGAACAGAGAGAGCTGAAAAGACTCAGAGAAGAGGAGCAGATG
ATACTGGACAGCCTGGCGGGGGCAGAGGCTGAGCTGGCTCAACAGAGTCAGTTGGTGGAGGAACTTATCT
CGGATCTAGAGCTGCGGCGTGAGTGGTCAGATACAGAGTTGCTGCAGGATATGAGCGGTATTTTGAAATG
GAGTCAGATCTGGACACTGAAGAAGCCAAAAGCAGTTTCTAAGAAACTGAGCATGGTATTCCAAGCTCCT
GATCTGAGTGGCATGCTACAAAAGTTTAGAGAGCTAACAGCTGTCCGGGCCTACTGGGACAACTTCACAT
TTAATCCAGAAAACCTAAATTTGAATCTTATACTTTCAGAAGACCACAGACAAGTGACATCTGTGTCCAT
TTGGCCCTTTAAGTGTTGTAATAACGGTATCTTGGGCTCCAAATGTTTCTCCTCAGGAAAACATTACTGG
GAAGTGGATGTGTCTGAAAAGAAGGCCTGGACCCTGGGAGTTTACACTAGAAAACGAACTTTAAGGTTTG
ATGTTAGACAACGCAAAGGTCAGCCAAATGGTTACCACAGATACAAACCACAGAATGGCTACTGGGTTAT
AGGGTTACAGCATGGATCGAAGTATAGTATCTTTGAGGATTCTTCCAACTGTGACCCTACTGTTCTGAAC
CCCTTTGTGGCCACCCCTCTCCATCGGGTTGGGGTTTTTCTTGACTGTGAAGAGGGCACAGTATCCTTCC
TCAATGTCACCAACCATGGATCACTCATTTACAAGTTCTCCCAATGCTGCTTTTCCCAACCTGCCTATCC
ATACTTCAATCCTTGGGACTGTCCAGCCCCCATGACCCTGTGTCCTCTGAACTCCTGA

Translation (485 aa):
MASTGLTNIQEKTTCPVCQELLTKALSLGCGHRVCQACLITKKNAVINPREKSSCPVCGTRFSLENLQAN
KHLANVVERLGEVKLKPDIGTKRDLCVHHGEKLLLFCKEDKKAICWVCERSQEHRGHHTFLWEEAVRECQ
ENLQKALTRLRKEQEKVETLEADIKEDRLSWKCQVQTERQRIQTGFNQLRRILDKEEQRELKRLREEEQM
ILDSLAGAEAELAQQSQLVEELISDLELRREWSDTELLQDMSGILKWSQIWTLKKPKAVSKKLSMVFQAP
DLSGMLQKFRELTAVRAYWDNFTFNPENLNLNLILSEDHRQVTSVSIWPFKCCNNGILGSKCFSSGKHYW
EVDVSEKKAWTLGVYTRKRTLRFDVRQRKGQPNGYHRYKPQNGYWVIGLQHGSKYSIFEDSSNCDPTVLN
PFVATPLHRVGVFLDCEEGTVSFLNVTNHGSLIYKFSQCCFSQPAYPYFNPWDCPAPMTLCPLNS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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