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Report for CCDS83723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83723.1 Public Mus musculus 10 Mier2 23 108 98 CCDS HistoryNCBI Gene:70427Re-query CCDS DB by CCDS ID:83723.1Re-query CCDS DB by GeneID:70427See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165028.7 ENSMUSP00000127387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165028.7Link to Ensembl Protein Viewer:ENSMUSP00000127387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165028Re-query CCDS DB by Protein ID:ENSMUSP00000127387
Original member NCBI NM_001316699.1 NP_001303628.1 Updated not alive Link to Nucleotide Sequence:NM_001316699.1Link to Protein Sequence:NP_001303628.1Re-query CCDS DB by Nucleotide ID:NM_001316699Re-query CCDS DB by Protein ID:NP_001303628
Current member NCBI NM_001316699.2 NP_001303628.1 Accepted alive Link to Nucleotide Sequence:NM_001316699.2Link to Protein Sequence:NP_001303628.1Re-query CCDS DB by Nucleotide ID:NM_001316699Re-query CCDS DB by Protein ID:NP_001303628Link to BLAST:NP_001303628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303628.1 541 Q3U3N0-1 541 100% 0 0

Chromosomal Locations for CCDS 83723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79541178 79541199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79541514 79541934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79542405 79542481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79542597 79542721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79544520 79544614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79544689 79544770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79545045 79545196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79547655 79547724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79548354 79548442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79548786 79548909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79549184 79549309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79549537 79549679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79550316 79550406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79555074 79555082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGGAGGCCTCCTCTCTGGAGAGGCAGAGTCCTCGTGTGGCCTCCTGCCTTGTACACAGCCTGTGTC
CTCGGGAGCCCAGCTTGCAGACCACGGCAGTGGTATCCATGGGCTCTGCCGACCATCAGTTCAACCTTGC
TGAGCTCCTGACGCAGAACTACAACCTCCAAGAAGGGTGTGCTGAGGCCCCGCAGTGTCCTGACAAGCCG
GAGGAGGAGCTGGACAAGGACTTCATTGACCAGAGCAGTGACATGCCCCTGGACGAGCTGCTTGCACTGT
ATGGGTACGAGTCGTCAGACCCCATCTCTGAGCAGGAGAGTGAAGGCGGTGACACGGCTCCAGCCCTGCC
GGACATGACCTTGGACAAGGAGCAGATAGCCAAGGACTTGCTTTCTGGGGAAGAAGAGGAAGAAACACAG
TCCTCCGCTGATGACCTCACCCCGTCTGTCACCTCCCATGAGGCCTCGGACCTCTTCCATAACCAGAGTG
GGTCCCGGTTCCTGGCTGGTGATAATGGCCCAGGCTCCTCAGCCTCCTCTGACACTGAAGAGGACGCGCT
TCCTGCCAACAAGTGCAAGAAGGAGATCATGGTAGGGCCTCAATTCCAAGCTGACCTCAACATCCTGCAC
TTGAACCGACATTGTGACAAGATCTATGAAAATGAAGACCAGCTGCTGTGGAGCCCCAGTGTACTCCCAG
AGCGGGAGGTGGAGGAGTTCCTGTACAGGGCAGTGAAACGGAGGTGGCAGGAGATGGCTGGCCCCCAGAT
CCCAGAGGGCGAGGTGGTGAAGGACAGTGAGCAGGCGCTGTATGAGCTCGTGAAGTGTAATTTCAACGTG
GAGGAGGCCCTGCGCAGGCTGAGGTTCAACGTAAAAGTGATCAGAGATGGGCTCTGTGCCTGGAGCGAGG
AGGAGTGCAGGAACTTTGAACATGGCTTCCGTGTTCATGGGAAGAACTTTCATCTGATTCAGGCCAACAA
GGTACGCACGCGGTCCGTGGGCGAGTGTGTGGAGTATTATTACCTGTGGAAGAAGTCTGAGCGCTACGAC
TACTTTGCCCAGCAGACACGGCTGGGCCGGAGGAAGTTTGTCTCCTCTGGAACCACGGATACTGAACAGG
ACCTAGATGGGCTTGACCCCGATGGCCATGCCCGGCTGCATTCTGAGGCAGGGGTGCCTGTGGAGCCCCT
GAATGTGGACATTGAAGCTGGTGGACTTGACCAGCCTGGCGTGGGCTCGGATGACCTCCCTTCCTCAGAG
CCAGGACCGCGTCCATTCCAGCAGCTGGACGAACCCCCTGCTGTGCCCTCGCTCCAGCAGCCCACTAGCC
TGGCCGCCTCAGCTGAACTCCCACCGGCGGCTGCAGCTGCTCCAGAGCCGGGCACTAGCCCCAGGCTGCC
TGTGGACCTTGCCCTACCCGAGGAGCTGCCCCTTGTGTCCAGCCCTGTGGCTCTGAGCGAGGACACTGCA
GAGCCCATGGCTCCAGCACAGGTGGCCTTGTCGGTCACTGAATTTGGACTCATTGGCATTGGGGATGTGA
ATCCCTTCCTAACTGGCCACCCAGCGTGCCCAACCTCCACACTGCACTCGGAGCCCTTGTCACAGTGCAA
TGTGATGACCTGTTGA

Translation (541 aa):
MAEASSLERQSPRVASCLVHSLCPREPSLQTTAVVSMGSADHQFNLAELLTQNYNLQEGCAEAPQCPDKP
EEELDKDFIDQSSDMPLDELLALYGYESSDPISEQESEGGDTAPALPDMTLDKEQIAKDLLSGEEEEETQ
SSADDLTPSVTSHEASDLFHNQSGSRFLAGDNGPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILH
LNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNV
EEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYD
YFAQQTRLGRRKFVSSGTTDTEQDLDGLDPDGHARLHSEAGVPVEPLNVDIEAGGLDQPGVGSDDLPSSE
PGPRPFQQLDEPPAVPSLQQPTSLAASAELPPAAAAAPEPGTSPRLPVDLALPEELPLVSSPVALSEDTA
EPMAPAQVALSVTEFGLIGIGDVNPFLTGHPACPTSTLHSEPLSQCNVMTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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