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Report for CCDS29185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29185.1 Public Mus musculus 18 Pcdhb19 23 108 98 CCDS HistoryNCBI Gene:93890Re-query CCDS DB by CCDS ID:29185.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059571.6 ENSMUSP00000053326.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059571.6Link to Ensembl Protein Viewer:ENSMUSP00000053326.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059571Re-query CCDS DB by Protein ID:ENSMUSP00000053326
Original member NCBI NM_053144.2 NP_444374.2 Updated not alive Link to Nucleotide Sequence:NM_053144.2Link to Protein Sequence:NP_444374.2Re-query CCDS DB by Nucleotide ID:NM_053144Re-query CCDS DB by Protein ID:NP_444374
Current member NCBI NM_053144.3 NP_444374.2 Accepted alive Link to Nucleotide Sequence:NM_053144.3Link to Protein Sequence:NP_444374.2Re-query CCDS DB by Nucleotide ID:NM_053144Re-query CCDS DB by Protein ID:NP_444374Link to BLAST:NP_444374.2

Chromosomal Locations for CCDS 29185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37497154 37499559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGAGAATCAAGAGGGACTCTATCTGCAGACAAGGCAAGTCCTGCTTCTCTTTGTTTTCCTAGGAATGT
CTCAAGCACACTCTGAGGCTGGGAGACTTTCAGTGGTGGAGGAAATGCTGAGTGGGGCCTTGGTAGGGAA
TTTGGTAAAGGACCTGGGGCTCCAGGTGGATGAGCTGTCTGCACGAGAGGCTCAAGTGGCCTCTAGTGAT
AATAAACTGCCTTTGCAATTGAACATAAATACAGGAGATTTGCTCCTTAGTGAACCGCTGGACAGGGAGG
AGCTGTGTGGCTCCACTGAGCCCTGTGTGCTCCATTTCCAGGTGTTACTGAAAAACCCCTTAAAGATTTT
GCAAGCTGAGCTTCAGGTCACGGATGTAAATGACAACTCCCCCGTATTCTTGGAAAAGGAGATGGTTTTA
GAAATCCCAGAGAACAGCCCTGTTGGTGCTGTGTTCTTGTTGGAAAGTGCGATCGATTTAGATGTAGGAA
TCAATGCTGTTAAAAGCTACGAGATAAGCCAGAACTCTCATTTCCACGTTACCATGAGAGTTAATCCCGA
TGGCAGGAAATACCCAGAGCTAGTTTTGGACAAGGCGCTGGATTACGAGGAGCAGCATGAGCTTCGTCTC
ATCCTCACTGCTTTGGATGGAGGGACGCCACCCAGGTCTGGGACTGCATTGGTCCGAGTGGAGGTCATAG
ATATTAACGACAACTCCCCCGAGTTTGACCACATGTTCTATGAAGTGACGGTTCCAGAGAATAGCATGCT
TGGCTCACTGCTTATCACTGCCTCGGCTTGGGATTTAGACTCAGGAATTAATGGTGAAGTATCGTACGCC
TTTTCCCATGCATCAGAGGATATTCGAAAAACATTTGCAATTAATGAACATTCTGGAGAAATACGTTTAA
AAGGCTATTTGGACTTTGAAACAACTGAATCCTACTCGATAATCATTAAAGCTACTGATCGGGGAGGACT
TTTTGGGAAATCTACAGTAAGAATTCAGGTGATGGATGTGAACGACAATTTTCCTGAAATCATTGTGTCA
TCGTTTATCAGTCCAATCCCAGAAAATACCGCAGAGACTTTAGTTATGATTTTTAGCATTCGAGACAAGG
ACTCGGGTGAGAATGGCAAGATGGTGTGTACTATTCCGGAGGGTCTCCCGTTTGTGCTAAAATCTTCTAT
TGAAAATTACTACCACTTAGAAACGGATGGAGCACTGGACAGAGAGAGCATAGCTGAATACAACATCACC
ATCTCTGTTACAGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAATAGTGCAGGTGGCCGACA
TCAATGACAATGCCCCTGCCTTCACCCAAACCTCCTATACCATGTTTTTCCATGAGAACAACAGCCCTGC
ATTGCACATAGGCACCATCAGCGCCACAGACTCTGACGCTGGCTCCAATGCCCACATCACCTACTCGCTG
ATGTCTGCTCAGGACCTTCAAATGGCCCTCTCCTCGCTAATCTCCATTAACGCTGACAACGGGCAGCTGT
TCGCGCTCAGGGCGCTGGACTATGAGGTCCTGCAGGCCTTCGAGTTCCAAGTGGGTGCGACAGACCGAGG
CTCACCTGCACTCAGCAGCCAGGCTCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACGCCTCTGCTCCCTGCACAGAGCTGCTGCCCAGGGCGGCGGAGCCCGGAT
ACCTGGTCACCAAGGTGGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCGTTCCAGCTGCT
CAAGGCTACAGAGCCAGGGCTGTTCAGCGTGTGGGCACACAATGGCGAGGTGCGCACCACCAGGCTGCTG
AGCGAGCGCGATGCACCCAAGCACAGGCTGCTGCTGCTGGTCAAGGACAATGGCGATCCTCCGCGCTCTG
CCAGCGTCACGCTGCACGTGCTAGTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGC
GCGCAATCCAGCGCACGAAGAGGACGCCCTAACACTCTACCTAGTCACTGCCTTGGCATCTGTGTCTTCG
CTCTTCCTCCTCTCTGTAATGCTGTTTGTGGGAGTAAGGTTGTGCAGGAGGGCCAGGGCAGCCTCTCTGG
GTGGCTGTACTGTGCCTGAGGGACACTTTCCTGACCATCTCATGGGCATTAACAGTGCGGGAACTCTGTC
CCAGAGCTACCAGTATGAGGTGTGTCTGATGGGAGGTAGTGGGACAAATGAGTTCAGATTCTTGAAGCCA
GTTTCCCCCAATTTACAACCTCAGTTCCCTGGGAAAGAAATAGAGGAAAGCTCTACTTTGCGCAATAGTT
TTGGGTTATTTAGGGACTGTAATTGA

Translation (801 aa):
MENQEGLYLQTRQVLLLFVFLGMSQAHSEAGRLSVVEEMLSGALVGNLVKDLGLQVDELSAREAQVASSD
NKLPLQLNINTGDLLLSEPLDREELCGSTEPCVLHFQVLLKNPLKILQAELQVTDVNDNSPVFLEKEMVL
EIPENSPVGAVFLLESAIDLDVGINAVKSYEISQNSHFHVTMRVNPDGRKYPELVLDKALDYEEQHELRL
ILTALDGGTPPRSGTALVRVEVIDINDNSPEFDHMFYEVTVPENSMLGSLLITASAWDLDSGINGEVSYA
FSHASEDIRKTFAINEHSGEIRLKGYLDFETTESYSIIIKATDRGGLFGKSTVRIQVMDVNDNFPEIIVS
SFISPIPENTAETLVMIFSIRDKDSGENGKMVCTIPEGLPFVLKSSIENYYHLETDGALDRESIAEYNIT
ISVTDLGTPRLTTQHTIIVQVADINDNAPAFTQTSYTMFFHENNSPALHIGTISATDSDAGSNAHITYSL
MSAQDLQMALSSLISINADNGQLFALRALDYEVLQAFEFQVGATDRGSPALSSQALVRVVVLDDNDNAPF
VLYPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
SERDAPKHRLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARNPAHEEDALTLYLVTALASVSS
LFLLSVMLFVGVRLCRRARAASLGGCTVPEGHFPDHLMGINSAGTLSQSYQYEVCLMGGSGTNEFRFLKP
VSPNLQPQFPGKEIEESSTLRNSFGLFRDCN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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