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Report for CCDS79625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79625.1 Public Mus musculus 18 Pcdhga4 23 108 98 CCDS HistoryNCBI Gene:93712Re-query CCDS DB by CCDS ID:79625.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194418.1 ENSMUSP00000142140.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194418.1Link to Ensembl Protein Viewer:ENSMUSP00000142140.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194418Re-query CCDS DB by Protein ID:ENSMUSP00000142140
Original member Current member NCBI NM_033587.4 NP_291065.3 Accepted alive Link to Nucleotide Sequence:NM_033587.4Link to Protein Sequence:NP_291065.3Re-query CCDS DB by Nucleotide ID:NM_033587Re-query CCDS DB by Protein ID:NP_291065Link to BLAST:NP_291065.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291065.3 930 Q91XY4 930 100% 0 0

Chromosomal Locations for CCDS 79625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37685400 37687817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGGCGGCTCCTTACAAATCAGACCGCAGGGGACTAATCTGGATCTGCATTTTCCTTGGATCCCTATGCG
ACATCCGCGCGGAACAGATCCGGTACTCTGTGCCGGAGGAGCTGGAAAGGGGCTCTGTGGTGGGTAATCT
CGCCGCGGACCTGGGGCTGGAGCCTGGAAAACTGGCAGAACGCGGAGTCCGCATCGTCTCCAGAGGTAAG
ACCCAGCTCTTTGCTCTGAACCCGCGAAGCGGCAGTTTGGTGACAGCAGGGAGGGTCGACAGAGAAGGGC
TCTGTGACAGATCCCCAAAGTGTACCGCAAATCTGGAGATTCTCCTAGAGGATAAAGTGAGGATTCTAGC
CATAGAAGTGGAGATTATCGATGTTAATGATAATGCCCCCAGCTTTGGAGCACAGCAGAGAGAAATAAAA
GTCGCTGAAAGTGAAAATCCTGGGACAAGATTTCCTCTTCCTGAAGCCTTTGATCTGGACATAGGGGTGA
ACGCCTTGCAGGGTTACCAGCTCAGCTCCAATGATCACTTCTCCCTGGATGTGCAAAGTGGACCGGATGG
GATTAAGTATCCAGAGCTAGTGCTGGAAAATGCCTTAGACCGCGAGGAAGAAGCCGTTCATCACCTGGTT
CTCACCGCCTTCGACGGAGGCGACCCGGTTCGCTCTGGTACTGCCACAATTCAAGTAACACTCGTGGACA
CCAACGACAATGCTCCTGTATTCACTCAGCCAGAGTACCACATTAGTGTGAAAGAGAATTTGCCTGTAGG
CACCCGGCTGCTTACCATAAAAGCCACTGACCCGGATGAAGGAGTCAACGGAGAAGTGACGTATTCTTTC
CGGAACGTAAGAGAGAAAATCTCCCAGCTCTTCCAGCTGAATTCTCTGACTGGGGACATTACAGTGTTGG
GGGAACTGGATTATGAAGACTCTGGATTCTACGATGTTGACGTAGAAGCCCATGATGGGCCTGGTCTTCG
AGCCAGAAGTAAGGTACTGGTGACAGTTCTGGATGTAAATGACAATGCCCCGGAAGTCACAGTCACCTCT
CTCACCAGCTCTATCCAGGAAGCTTCTTCCCCAGGCACAGTGATTGCACTCTTCAACGTGCACGACAGCG
ACTCTGGAGAGAACGGCCTTGTCACTTGTTCTATTCCAGATAATCTTCCATTCAGACTGGAAAAGACCTA
TGGAAATTATCATCGGTTGTTGATACACAGGACTCTGGACAGGGAAGAAGTCTCTGACTATAACATTACA
ATAACTGCCACCGACCAGGGAACTCCACCTCTGTCTACAGAGACTTATATCTCATTGCAGGTGGTAGATA
TTAATGACAACCCGCCGACCTTCACCCATGCCTCCTATTCTGCTTACATTCCAGAAAACAACCCTAGAGG
AGCTTCCATCTTATCCATAACAGCCCAGGACCCAGACAGTGGTGAGAATGCCCAGGTTATCTATTCTCTG
TCAGAGGACACTATCCAGGGGGCACCTATGTCCTCCTACGTCTCCATAAACTCCAATACCGGTGTCCTTT
ATGCACTGCGTTCCTTTGATTATGAGCAGTTTCAAGACTTGAAGTTACTGGTGACAGCCAGGGACAGTGG
GACTCCTCCACTCAGCAGCAACGTGTCCCTGAGCTTGTCTGTGCTGGACCAGAACGATAACACCCCTGAG
ATCCTGTATCCCACCATCCCCACTGATGGTTCTACTGGTGTGGAGCTGACACCTCGTTCTGCAGATCCTG
GATACCTGGTGACCAAGGTGGTGGCCGTAGACAAAGACTCAGGACAGAACGCCTGGCTGTCCTACCGCCT
GCTCAAGGCCAGCGAGCCAGGGCTCTTCTCAGTGGGGCTGCACACAGGTGAGGTACGCACTGCTCGGGCC
CTGCTGGACAGAGATGCTCTCAAGCAGAGCCTGGTGGTGACCGTGCAGGACCATGGCCAGCCCCCTCTCT
CCGCCACTGTCACACTCACCATAGCTGTGTCAGACAACATTCCAGACATCCTGGCTGATCTGGTCAACAT
TAACGCCCCCATTGACCAGGAGGATTCAGACATCACATTGTACCTGGTGGTAGCTGTGGCTGCGGTCTCT
TGTGTCTTCTTAGCCTTTGTCATTGTGCTGCTGATACACAGGCTCCGTCGCTGGCACTCAACTCGCCTGC
TTCAGGCTGCAGGTAATGGGTTGTCATCCTTGCCTGCCTCACATTTTGTGGGTGTGGATGGTGTACACGC
TTTCCTACAGACCTATTCTCATGAGGTCTCACTCACAGCAGACTCTGGGAAGAGTCACCTGATCTTCCCA
CAGCCCAACTACGCAGACACACTCATCAGCCAGGAGAGCTGTGGGAAGAGTGATCCTCTCCTGGTATCTC
AAGACTTGCTTGAAATAAAAGGAGACTCCAGTCTGCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTC
TCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAACAACCAG
TTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCC
TGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCACGTGCC
TGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGAT
GGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (930 aa):
MAAPYKSDRRGLIWICIFLGSLCDIRAEQIRYSVPEELERGSVVGNLAADLGLEPGKLAERGVRIVSRGK
TQLFALNPRSGSLVTAGRVDREGLCDRSPKCTANLEILLEDKVRILAIEVEIIDVNDNAPSFGAQQREIK
VAESENPGTRFPLPEAFDLDIGVNALQGYQLSSNDHFSLDVQSGPDGIKYPELVLENALDREEEAVHHLV
LTAFDGGDPVRSGTATIQVTLVDTNDNAPVFTQPEYHISVKENLPVGTRLLTIKATDPDEGVNGEVTYSF
RNVREKISQLFQLNSLTGDITVLGELDYEDSGFYDVDVEAHDGPGLRARSKVLVTVLDVNDNAPEVTVTS
LTSSIQEASSPGTVIALFNVHDSDSGENGLVTCSIPDNLPFRLEKTYGNYHRLLIHRTLDREEVSDYNIT
ITATDQGTPPLSTETYISLQVVDINDNPPTFTHASYSAYIPENNPRGASILSITAQDPDSGENAQVIYSL
SEDTIQGAPMSSYVSINSNTGVLYALRSFDYEQFQDLKLLVTARDSGTPPLSSNVSLSLSVLDQNDNTPE
ILYPTIPTDGSTGVELTPRSADPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA
LLDRDALKQSLVVTVQDHGQPPLSATVTLTIAVSDNIPDILADLVNINAPIDQEDSDITLYLVVAVAAVS
CVFLAFVIVLLIHRLRRWHSTRLLQAAGNGLSSLPASHFVGVDGVHAFLQTYSHEVSLTADSGKSHLIFP
QPNYADTLISQESCGKSDPLLVSQDLLEIKGDSSLQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQ
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
GKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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