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Report for CCDS2930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2930.1 Public Homo sapiens 3 CLDND1 24 110 108 CCDS HistoryNCBI Gene:56650Re-query CCDS DB by CCDS ID:2930.1Re-query CCDS DB by GeneID:56650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341181.11 ENSP00000340247.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341181.11Link to Ensembl Protein Viewer:ENSP00000340247.6Re-query CCDS DB by Nucleotide ID:ENST00000341181Re-query CCDS DB by Protein ID:ENSP00000340247
Original member Current member EBI ENST00000394180.6 ENSP00000377734.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394180.6Link to Ensembl Protein Viewer:ENSP00000377734.2Re-query CCDS DB by Nucleotide ID:ENST00000394180Re-query CCDS DB by Protein ID:ENSP00000377734
Original member Current member EBI ENST00000394185.6 ENSP00000377739.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394185.6Link to Ensembl Protein Viewer:ENSP00000377739.2Re-query CCDS DB by Nucleotide ID:ENST00000394185Re-query CCDS DB by Protein ID:ENSP00000377739
Original member Current member EBI ENST00000503004.5 ENSP00000421226.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503004.5Link to Ensembl Protein Viewer:ENSP00000421226.1Re-query CCDS DB by Nucleotide ID:ENST00000503004Re-query CCDS DB by Protein ID:ENSP00000421226
Original member Current member EBI ENST00000510545.5 ENSP00000423590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510545.5Link to Ensembl Protein Viewer:ENSP00000423590.1Re-query CCDS DB by Nucleotide ID:ENST00000510545Re-query CCDS DB by Protein ID:ENSP00000423590
Original member Current member EBI ENST00000513287.5 ENSP00000426869.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513287.5Link to Ensembl Protein Viewer:ENSP00000426869.1Re-query CCDS DB by Nucleotide ID:ENST00000513287Re-query CCDS DB by Protein ID:ENSP00000426869
Original member Current member NCBI NM_001040181.2 NP_001035271.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040181.2Link to Protein Sequence:NP_001035271.1Re-query CCDS DB by Nucleotide ID:NM_001040181Re-query CCDS DB by Protein ID:NP_001035271Link to BLAST:NP_001035271.1
Original member Current member NCBI NM_001040183.2 NP_001035273.1 Accepted alive Link to Nucleotide Sequence:NM_001040183.2Link to Protein Sequence:NP_001035273.1Re-query CCDS DB by Nucleotide ID:NM_001040183Re-query CCDS DB by Protein ID:NP_001035273Link to BLAST:NP_001035273.1
Original member Current member NCBI NM_001040199.2 NP_001035289.1 Accepted alive Link to Nucleotide Sequence:NM_001040199.2Link to Protein Sequence:NP_001035289.1Re-query CCDS DB by Nucleotide ID:NM_001040199Re-query CCDS DB by Protein ID:NP_001035289Link to BLAST:NP_001035289.1
Original member Current member NCBI NM_019895.3 NP_063948.1 Accepted alive Link to Nucleotide Sequence:NM_019895.3Link to Protein Sequence:NP_063948.1Re-query CCDS DB by Nucleotide ID:NM_019895Re-query CCDS DB by Protein ID:NP_063948Link to BLAST:NP_063948.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035271.1 253 Q9NY35-1 253 100% 0 0
NP_001035273.1 253 Q9NY35-1 253 100% 0 0
NP_001035289.1 253 Q9NY35-1 253 100% 0 0
NP_063948.1 253 Q9NY35-1 253 100% 0 0

Chromosomal Locations for CCDS 2930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98516659 98516879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98517052 98517189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98518885 98518995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98521133 98521424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGATAACCGTTTTGCTACAGCATTTGTAATTGCTTGTGTGCTTAGCCTCATTTCCACCATCTACATGG
CAGCCTCCATTGGCACAGACTTCTGGTATGAATATCGAAGTCCAGTTCAAGAAAATTCCAGTGATTTGAA
TAAAAGCATCTGGGATGAATTCATTAGTGATGAGGCAGATGAAAAGACTTATAATGATGCACTTTTTCGA
TACAATGGCACAGTGGGATTGTGGAGACGGTGTATCACCATACCCAAAAACATGCATTGGTATAGCCCAC
CAGAAAGGACAGAGTCATTTGATGTGGTCACAAAATGTGTGAGTTTCACACTAACTGAGCAGTTCATGGA
GAAATTTGTTGATCCCGGAAACCACAATAGCGGGATTGATCTCCTTAGGACCTATCTTTGGCGTTGCCAG
TTCCTTTTACCTTTTGTGAGTTTAGGTTTGATGTGCTTTGGGGCTTTGATCGGACTTTGTGCTTGCATTT
GCCGAAGCTTATATCCCACCATTGCCACGGGCATTCTCCATCTCCTTGCAGGTCTGTGTACACTGGGCTC
AGTAAGTTGTTATGTTGCTGGAATTGAACTACTCCACCAGAAACTAGAGCTCCCTGACAATGTATCCGGT
GAATTTGGATGGTCCTTCTGCCTGGCTTGTGTCTCTGCTCCCTTACAGTTCATGGCTTCTGCTCTCTTCA
TCTGGGCTGCTCACACCAACCGGAAAGAGTACACCTTAATGAAGGCATATCGTGTGGCATGA

Translation (253 aa):
MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEADEKTYNDALFR
YNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQ
FLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSG
EFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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