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Report for CCDS6853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6853.1 Public Homo sapiens 9 LHX2 24 110 108 CCDS HistoryNCBI Gene:9355Re-query CCDS DB by CCDS ID:6853.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373615.9 ENSP00000362717.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373615.9Link to Ensembl Protein Viewer:ENSP00000362717.4Re-query CCDS DB by Nucleotide ID:ENST00000373615Re-query CCDS DB by Protein ID:ENSP00000362717
Original member Current member NCBI NM_004789.4 NP_004780.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004789.4Link to Protein Sequence:NP_004780.3Re-query CCDS DB by Nucleotide ID:NM_004789Re-query CCDS DB by Protein ID:NP_004780Link to BLAST:NP_004780.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004780.3 406 P50458 406 100% 0 0

Chromosomal Locations for CCDS 6853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124012349 124012468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124013961 124014163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124015122 124015525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124021099 124021304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124032420 124032707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGCTGTTCCACAGTCTGTCGGGCCCCGAGGTGCACGGGGTCATCGACGAGATGGACCGCAGGGCCAAGA
GCGAGGCTCCCGCCATCAGCTCCGCCATCGACCGCGGCGACACCGAGACGACCATGCCGTCCATCAGCAG
TGACCGCGCCGCGCTGTGCGCCGGCTGCGGGGGCAAGATCTCGGACCGCTACTACCTGCTGGCGGTGGAC
AAGCAGTGGCACATGCGCTGCCTCAAGTGCTGCGAGTGCAAGCTCAACCTGGAGTCGGAGCTCACCTGTT
TCAGCAAGGACGGTAGCATCTACTGCAAGGAAGACTACTACAGGCGCTTCTCTGTGCAGCGCTGCGCCCG
CTGCCACCTGGGCATCTCGGCCTCGGAGATGGTGATGCGCGCTCGGGACTTGGTTTATCACCTCAACTGC
TTCACGTGCACCACGTGTAACAAGATGCTGACCACGGGCGACCACTTCGGCATGAAGGACAGCCTGGTCT
ACTGCCGCTTGCACTTCGAGGCGCTGCTGCAGGGCGAGTACCCCGCACACTTCAACCATGCCGACGTGGC
AGCGGCGGCCGCTGCAGCCGCGGCGGCCAAGAGCGCGGGGCTGGGCGCAGCAGGGGCCAACCCTCTGGGT
CTTCCCTACTACAATGGCGTGGGCACTGTGCAGAAGGGGCGGCCGAGGAAACGTAAGAGCCCGGGCCCCG
GTGCGGATCTGGCGGCCTACAACGCTGCGCTAAGCTGCAACGAAAACGACGCAGAGCACCTGGACCGTGA
CCAGCCATACCCGAGCAGCCAGAAGACCAAGCGCATGCGCACGTCCTTCAAGCACCACCAGCTTCGGACC
ATGAAGTCTTACTTTGCCATTAACCACAACCCCGACGCCAAGGACTTGAAGCAGCTCGCGCAAAAGACGG
GCCTCACCAAGCGGGTCCTCCAGGTCTGGTTCCAGAACGCCCGAGCCAAGTTCAGGCGCAACCTCTTACG
GCAGGAAAACACGGGCGTGGACAAGTCGACAGACGCGGCGCTGCAGACAGGGACGCCATCGGGCCCGGCC
TCGGAGCTCTCCAACGCCTCGCTCAGCCCCTCCAGCACGCCCACCACCCTGACAGACTTGACTAGCCCCA
CCCTGCCAACTGTGACGTCCGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCATGAGCCTCACAGCCC
CTCACAAACGACTCTTACCAACCTTTTCTAA

Translation (406 aa):
MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVD
KQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNC
FTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLG
LPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRT
MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPA
SELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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