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Report for CCDS9899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9899.1 Public Homo sapiens 14 TRIP11 24 110 108 CCDS HistoryNCBI Gene:9321Re-query CCDS DB by CCDS ID:9899.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267622.8 ENSP00000267622.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267622.8Link to Ensembl Protein Viewer:ENSP00000267622.4Re-query CCDS DB by Nucleotide ID:ENST00000267622Re-query CCDS DB by Protein ID:ENSP00000267622
Original member Current member NCBI NM_004239.4 NP_004230.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004239.4Link to Protein Sequence:NP_004230.2Re-query CCDS DB by Nucleotide ID:NM_004239Re-query CCDS DB by Protein ID:NP_004230Link to BLAST:NP_004230.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004230.2 1979 Q15643-1 1979 100% 0 0

Chromosomal Locations for CCDS 9899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 91969673 91969893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91972717 91972861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91974627 91974743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91975172 91975286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91976108 91976189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91988284 91988383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91993809 91993912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91995352 91995515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91999240 91999433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91999968 92000108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92003419 92006448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92007640 92007852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92010986 92011072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92011755 92011795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92014215 92014577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92015696 92015861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92017682 92017750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92021556 92021831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92025310 92025420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92033192 92033253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92039547 92039685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5940 nt):
ATGTCGTCCTGGCTTGGGGGCCTCGGCTCCGGATTGGGCCAGTCTCTGGGTCAAGTCGGGGGCAGCCTGG
CT
TCCCTCACTGGCCAGATATCAAACTTTACAAAGGATATGCTGATGGAGGGCACGGAGGAAGTGGAAGC
A
GAATTACCTGATTCTAGGACAAAGGAAATTGAAGCCATTCATGCAATCTTGAGATCAGAGAATGAAAGG
CTT
AAGAAACTTTGTACTGATCTAGAAGAGAAACATGAAGCATCAGAGATTCAAATAAAGCAGCAATCTA
CA
AGTTACCGAAATCAACTTCAACAAAAAGAGGTAGAAATCAGCCATCTTAAAGCCAGACAGATTGCACT
C
CAGGATCAGTTGCTGAAACTGCAGTCAGCTGCTCAGTCAGTACCTTCAGGAGCTGGTGTACCAGCAACC
ACT
GCATCATCTTCATTCGCTTATGGGATTAGTCATCATCCTTCAGCTTTCCATGACGATGACATGGACT
TT
GGTGATATAATTTCATCCCAACAAGAAATAAACCGACTCTCAAATGAAGTTTCAAGACTTGAGTCTGA
A
GTTGGCCATTGGAGGCATATTGCTCAGACTTCCAAAGCACAAGGAACAGATAACTCTGATCAAAGTGAA
ATA
TGTAAACTACAAAATATCATTAAGGAACTAAAACAGAACCGAAGTCAGGAAATTGATGACCATCAAC
AT
GAAATGTCAGTACTGCAGAATGCACACCAACAGAAATTGACAGAAATAAGTCGACGACATCGAGAAGA
A
TTAAGTGACTATGAAGAACGAATTGAAGAACTTGAAAATCTGTTACAACAAGGTGGCTCTGGAGTTATA
GAA
ACTGATCTCTCTAAAATCTATGAGATGCAAAAAACTATTCAAGTTCTACAAATAGAAAAAGTGGAGT
CT
ACCAAAAAAATGGAACAACTTGAGGATAAAATAAAAGATATAAATAAAAAATTATCTTCTGCAGAAAA
T
GACAGAGATATTTTGAGGAGAGAACAAGAACAGCTAAATGTGGAAAAGAGACAAATAATGGAAGAATGT
GAA
AACTTGAAATTGGAATGTAGTAAATTGCAGCCTTCTGCTGTGAAGCAAAGTGATACTATGACAGAAA
AG
GAAAGAATTCTTGCCCAGAGTGCATCAGTGGAAGAAGTGTTCAGACTACAACAAGCACTGTCTGATGC
C
GAAAATGAAATAATGAGATTGAGTAGTTTAAACCAGGATAACAGTCTTGCTGAAGACAATCTGAAACTT
AAA
ATGCGTATCGAAGTTTTAGAAAAAGAGAAGTCATTACTGAGTCAAGAAAAGGAAGAACTTCAGATGT
CA
CTTTTAAAATTGAACAATGAATATGAAGTAATTAAAAGTACAGCTACAAGAGACATAAGTTTGGATTC
A
GAATTACATGACTTAAGACTTAATTTGGAGGCAAAGGAACAAGAACTCAATCAGAGTATTAGTGAAAAG
GAA
ACACTGATAGCTGAGATAGAAGAATTGGACAGACAGAATCAAGAAGCTACAAAGCACATGATTTTGA
TA
AAAGATCAGCTATCAAAACAACAAAATGAAGGAGATAGCATCATCAGTAAACTGAAACAAGATCTAAA
T
GATGAAAAAAAGAGAGTTCATCAACTTGAAGATGATAAAATGGACATTACTAAAGAGTTAGATGTACAG
AAA
GAAAAGCTAATTCAAAGTGAAGTGGCCCTAAATGATTTACATTTAACCAAGCAGAAACTTGAGGACA
AA
GTAGAAAATTTAGTAGATCAGCTAAATAAATCACAAGAAAGTAATGTAAGCATCCAGAAGGAGAATTT
A
GAACTTAAGGAGCATATTAGACAAAATGAGGAGGAGCTTTCTAGAATAAGGAATGAGTTAATGCAGTCT
CTA
AATCAAGACTCTAATAGTAATTTTAAGGATACCTTACTTAAAGAAAGAGAAGCTGAAGTTAGAAACT
TA
AAGCAAAATCTTTCAGAATTAGAACAGCTCAATGAAAATTTAAAGAAAGTTGCTTTTGATGTCAAAAT
G
GAAAATGAAAAGTTAGTTTTAGCATGTGAAGATGTGAGGCATCAGTTAGAAGAATGTCTTGCTGGTAAC
AAT
CAGCTTTCTCTGGAAAAAAACACTATTGTGGAGACTCTAAAAATGGAAAAAGGAGAGATAGAGGCAG
AA
TTGTGTTGGGCTAAAAAGAGGCTGTTGGAAGAAGCAAACAAGTATGAGAAAACCATTGAAGAACTGTC
A
AATGCACGTAATTTGAATACCTCTGCCTTACAGCTGGAACATGAGCATTTAATTAAACTCAATCAAAAG
AAA
GACATGGAAATAGCAGAACTCAAAAAGAATATTGAACAAATGGATACTGACCATAAAGAAACTAAGG
AC
GTTTTGTCATCTAGTTTAGAAGAGCAGAAGCAGTTGACACAACTTATAAACAAGAAAGAAATTTTTAT
T
GAAAAGCTTAAAGAAAGAAGTTCAAAGCTGCAGGAGGAATTGGATAAATATTCTCAGGCCTTAAGAAAA
AAT
GAAATTTTAAGACAGACCATAGAGGAAAAAGACCGAAGTCTTGGATCCATGAAAGAGGAAAATAATC
AT
CTGCAAGAAGAATTGGAACGACTCAGGGAAGAGCAGAGTCGAACCGCACCTGTGGCTGACCCTAAAAC
C
CTTGATAGTGTTACTGAACTAGCATCTGAGGTATCTCAACTGAACACGATCAAGGAACATCTTGAAGAG
GAA
ATTAAACATCATCAAAAGATAATTGAAGATCAAAACCAGAGTAAGATGCAACTACTTCAGTCTTTAC
AA
GAGCAAAAGAAGGAAATGGATGAGTTTAGATACCAGCATGAGCAAATGAACGCCACACACACCCAGCT
C
TTTTTAGAGAAGGATGAGGAAATTAAGAGTTTGCAAAAAACAATTGAACAAATCAAAACCCAGTTGCAT
GAA
GAAAGACAGGACATTCAAACAGATAACTCTGATATTTTTCAAGAAACAAAAGTTCAGAGCCTTAATA
TA
GAAAATGGAAGTGAAAAGCATGATTTATCTAAAGCTGAAACGGAAAGATTAGTGAAAGGAATAAAAGA
G
CGAGAACTGGAGATTAAACTTCTAAATGAAAAGAATATATCTTTAACTAAACAGATTGATCAGTTGTCC
AAA
GATGAAGTTGGTAAACTAACTCAGATTATTCAGCAGAAAGATTTGGAGATACAAGCTCTTCATGCTA
GA
ATTTCTTCAACTTCCCATACTCAAGATGTTGTTTACCTTCAACAGCAACTGCAGGCTTATGCTATGGA
A
AGAGAAAAGGTATTTGCTGTTTTGAATGAGAAGACTAGGGAAAATAGCCATCTAAAAACAGAATATCAC
AAA
ATGATGGATATTGTTGCTGCCAAGGAAGCAGCTCTTATCAAACTGCAAGATGAAAATAAAAAATTGT
CC
ACTAGATTTGAAAGTAGTGGCCAAGATATGTTTAGAGAAACTATTCAGAATTTATCACGTATCATTCG
A
GAAAAAGACATCGAAATAGATGCACTAAGTCAGAAATGTCAGACTTTATTGGCAGTTTTACAAACATCC
AGC
ACTGGTAATGAGGCTGGAGGTGTTAATAGTAATCAATTTGAGGAGCTTCTACAGGAACGTGACAAGT
TA
AAACAGCAAGTAAAGAAAATGGAAGAGTGGAAGCAGCAGGTGATGACCACAGTACAAAATATGCAACA
C
GAGTCAGCCCAGCTTCAGGAAGAGCTTCACCAACTTCAAGCACAGGTTTTGGTTGACAGTGATAATAAT
TCT
AAATTACAAGTGGACTATACTGGCCTGATCCAAAGTTATGAGCAGAATGAAACCAAACTCAAAAATT
TT
GGGCAGGAATTAGCACAAGTTCAGCACAGCATTGGGCAGCTTTGCAATACCAAGGATCTTCTTTTAGG
A
AAACTTGATATTATTTCACCCCAGCTGTCTTCTGCATCATTGCTTACTCCCCAGTCTGCAGAGTGTCTT
AGA
GCAAGTAAGTCTGAAGTATTGAGTGAATCTTCTGAATTGCTTCAGCAAGAGTTAGAAGAGCTAAGAA
AA
TCACTACAGGAAAAAGATGCAACAATTAGAACTCTCCAGGAAAATAACCACAGATTGTCTGATTCGAT
T
GCTGCCACCTCAGAGCTAGAAAGAAAAGAACACGAACAAACCGATTCAGAAATCAAGCAGCTAAAGGAG
AAA
CAAGATGTTTTGCAAAAGTTACTTAAGGAAAAAGACCTCTTAATCAAAGCCAAAAGTGATCAACTAC
TT
TCTTCCAATGAAAATTTCACTAACAAAGTAAATGAAAACGAACTTTTGAGGCAGGCAGTAACAAACCT
G
AAGGAGAGAATATTAATTCTAGAGATGGACATTGGCAAACTAAAAGGAGAAAATGAAAAAATAGTGGAA
ACA
TACAGGGGAAAGGAAACAGAATATCAAGCGTTACAAGAGACTAACATGAAGTTTTCTATGATGCTGC
GA
GAAAAAGAGTTTGAGTGCCACTCAATGAAGGAGAAGGCTCTTGCTTTTGAACAGCTATTGAAAGAGAA
A
GAACAGGGCAAGACTGGAGAGTTAAATCAGCTTTTAAATGCAGTTAAATCAATGCAGGAGAAGACAGTT
GTG
TTTCAACAGGAGAGAGACCAAGTCATGTTGGCCCTGAAACAAAAACAAATGGAAAATACTGCCCTAC
AG
AATGAGGTTCAACGTTTACGTGACAAAGAATTTCGTTCAAACCAAGAGCTAGAGAGATTGCGTAATCA
T
CTTTTAGAATCAGAAGATTCTTATACCCGTGAAGCTTTGGCTGCAGAAGATAGAGAGGCTAAACTAAGA
AAG
AAAGTCACAGTATTGGAGGAAAAGCTAGTTTCATCCTCTAATGCAATGGAAAATGCAAGCCATCAAG
CC
AGTGTGCAGGTAGAGTCATTGCAAGAACAGTTGAATGTAGTTTCCAAGCAAAGGGATGAAACTGCGCT
G
CAGCTTTCTGTCTCTCAGGAACAAGTAAAGCAGTATGCTCTGTCACTGGCCAACCTGCAGATGGTACTA
GAG
CATTTCCAACAAGAGGAAAAAGCTATGTATTCTGCTGAACTCGAAAAGCAAAAACAGCTTATAGCTG
AA
TGGAAGAAAAACGCAGAAAATCTGGAAGGAAAAGTGATATCATTACAGGAATGTTTGGATGAAGCAAA
T
GCTGCATTGGATTCAGCATCAAGACTTACAGAACAGTTAGATGTAAAAGAAGAACAAATTGAAGAACTT
AAA
AGACAAAATGAGCTCCGACAAGAAATGCTGGATGATGTACAAAAGAAATTGATGAGCTTAGCAAACA
GC
TCAGAAGGAAAAGTAGACAAAGTCCTAATGAGAAACCTCTTCATTGGTCATTTCCACACACCGAAAAA
T
CAGCGTCATGAAGTGTTACGGTTAATGGGGAGCATCCTGGGCGTCAGAAGGGAGGAGATGGAGCAGTTG
TTT
CATGACGATCAGGGCGGTGTTACCAGGTGGATGACTGGGTGGCTTGGAGGAGGATCAAAAAGTGTTC
CC
AACACACCTTTGAGACCAAATCAGCAATCTGTGGTTAATAGTTCTTTTTCAGAACTTTTTGTTAAATT
T
CTAGAAACAGAATCTCATCCATCCATTCCACCACCAAAGCTTTCTGTTCATGATATGAAACCTCTGGAT
TCA
CCAGGAAGAAGAAAAAGAGATACAAATGCACCAGAAAGTTTTAAAGATACAGCAGAATCCAGGTCTG
GT
AGAAGAACAGATGTAAATCCGTTTTTGGCTCCTCGCTCGGCAGCTGTACCTCTTATTAACCCAGCTGG
A
CTTGGACCTGGTGGGCCCGGGCATCTTCTTCTGAAACCCATCTCAGATGTTTTGCCCACATTTACACCT
TTG
CCAGCGTTACCTGACAACAGTGCTGGGGTTGTGCTGAAAGACCTTTTAAAGCAATAG


Translation (1979 aa):
MSSWLGGLGSGLGQSLGQVGGSLASLTGQISNFTKDMLMEGTEEVEAELPDSRTKEIEAIHAILRSENER
L
KKLCTDLEEKHEASEIQIKQQSTSYRNQLQQKE
VEISHLKARQIALQDQLLKLQSAAQSVPSGAGVPAT
T
ASSSFAYGISHHPSAFHDDDMDFGDIISSQQEINRLSNEVSRLESEVGHWRHIAQ
TSKAQGTDNSDQSE
I
CKLQNIIK
ELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVI
E
TDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEEC
E
NLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALS
DAENEIMRLSSLNQDNSLAEDNLKL
K
MRIEVLEKEKSLLSQEK
EELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEK
E
TLIAEIEELDRQNQEATK
HMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQ
K
EKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQS
L
NQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGN
N
QLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQK
K
DMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRK
N
EILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEE
E
IKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIEQIKTQLH
E
ERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLS
K
DEVGKLTQIIQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYH
K
MMDIVAAKEAALIKLQDENKKLSTRFESSGQDMFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTS
S
TGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNN
S
KLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASLLTPQSAECL
R
ASKSEVLSESSELLQQELEELRKSLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQLKE
K
QDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERILILEMDIGKLKGENEKIVE
T
YRGKETEYQALQETNMKFSMMLREKEFECHSMKEKALAFEQLLKEKEQ
GKTGELNQLLNAVKSMQEKTV
V
FQQERDQVMLALKQKQMENTALQNE
VQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDREAKLR
K
KVTVLEEKLVSSSNAMENA
SHQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVL
E
HFQQ
EEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEANAALDSASRLTEQLDVKEEQIEEL
K
RQ
NELRQEMLDDVQKKLMSLANSSEGKVDKVLMRNLFIGHFHTPKNQRHEVLRLMGSILGVRREEMEQL
F
HDDQGGVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNS
SFSELFVKFLETESHPSIPPPKLSVHDMKPLD
S
PGRRKRDTNAPESFK
DTAESRSGRRTDVNPFLAPRSAAVPLINPAGLGPGGPGHLLLKPISDVLPTFTP
L
PALPDNSAGVVLKDLLKQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser