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Report for CCDS28591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28591.1 Public Mus musculus 17 Cdkn1a 23 108 98 CCDS HistoryNCBI Gene:12575Re-query CCDS DB by CCDS ID:28591.1Re-query CCDS DB by GeneID:12575See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023829.7 ENSMUSP00000023829.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023829.7Link to Ensembl Protein Viewer:ENSMUSP00000023829.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023829Re-query CCDS DB by Protein ID:ENSMUSP00000023829
Original member Current member EBI ENSMUST00000122348.2 ENSMUSP00000112411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122348.2Link to Ensembl Protein Viewer:ENSMUSP00000112411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122348Re-query CCDS DB by Protein ID:ENSMUSP00000112411
Original member Current member EBI ENSMUST00000119901.8 ENSMUSP00000113150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119901.8Link to Ensembl Protein Viewer:ENSMUSP00000113150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119901Re-query CCDS DB by Protein ID:ENSMUSP00000113150
Original member Current member EBI ENSMUST00000233296.1 ENSMUSP00000156559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233296.1Link to Ensembl Protein Viewer:ENSMUSP00000156559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233296Re-query CCDS DB by Protein ID:ENSMUSP00000156559
Original member Current member NCBI NM_001111099.2 NP_001104569.1 Accepted alive Link to Nucleotide Sequence:NM_001111099.2Link to Protein Sequence:NP_001104569.1Re-query CCDS DB by Nucleotide ID:NM_001111099Re-query CCDS DB by Protein ID:NP_001104569Link to BLAST:NP_001104569.1
Original member Current member NCBI NM_007669.5 NP_031695.1 Accepted alive Link to Nucleotide Sequence:NM_007669.5Link to Protein Sequence:NP_031695.1Re-query CCDS DB by Nucleotide ID:NM_007669Re-query CCDS DB by Protein ID:NP_031695Link to BLAST:NP_031695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104569.1 159 P39689 159 100% 0 0
NP_031695.1 159 P39689 159 100% 0 0

Chromosomal Locations for CCDS 28591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29098408 29098837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29099344 29099393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGTCCAATCCTGGTGATGTCCGACCTGTTCCGCACAGGAGCAAAGTGTGCCGTTGTCTCTTCGGTCCCG
TGGACAGTGAGCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACG
GTGGAACTTTGACTTCGTCACGGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGCGCGTTCGGAGCCTA
GGGCTGCCCAAGGTCTACCTGAGCCCTGGGTCCCGCAGCCGTGACGACCTGGGAGGGGACAAGAGGCCCA
GTACTTCCTCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGCACTCT
GGTGTCTGAGCGGCCTGAAGATTCCCCGGGTGGGCCCGGAACATCTCAGGGCCGAAAACGGAGGCAGACC
AGCCTGACAGATTTCTATCACTCCAAGCGCAGATTGGTCTTCTGCAAGAGAAAACCCTGA

Translation (159 aa):
MSNPGDVRPVPHRSKVCRCLFGPVDSEQLRRDCDALMAGCLQEARERWNFDFVTETPLEGNFVWERVRSL
GLPKVYLSPGSRSRDDLGGDKRPSTSSALLQGPAPEDHVALSLSCTLVSERPEDSPGGPGTSQGRKRRQT
SLTDFYHSKRRLVFCKRKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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