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Report for CCDS4254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4254.1 Public Homo sapiens 5 PCDHB12 24 110 108 CCDS HistoryNCBI Gene:56124Re-query CCDS DB by CCDS ID:4254.1Re-query CCDS DB by GeneID:56124See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239450.4 ENSP00000239450.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239450.4Link to Ensembl Protein Viewer:ENSP00000239450.2Re-query CCDS DB by Nucleotide ID:ENST00000239450Re-query CCDS DB by Protein ID:ENSP00000239450
Original member Current member NCBI NM_018932.4 NP_061755.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018932.4Link to Protein Sequence:NP_061755.1Re-query CCDS DB by Nucleotide ID:NM_018932Re-query CCDS DB by Protein ID:NP_061755Link to BLAST:NP_061755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061755.1 795 Q9Y5F1-1 795 100% 0 0

Chromosomal Locations for CCDS 4254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141208908 141211295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGAAAACGGAGGGGCAGGCACTCTGCAGATAAGGCAAGTCCTGCTTTTCTTTGTTTTGCTGGGAATGT
CTCAGGCGGGCTCTGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAGAGCGGGAGCTTTGTAGGAAA
TTTGGCAAAGACCCTGGGACTCGAGGTGAGTGAGCTGTCTTCGCGGGGGGCTCGGGTGGTTTCTAATGAT
AACAAAGAGTGTTTGCAGCTGGACACAAACACTGGGGATTTGCTCCTGAGAGAAATGCTAGACAGGGAGG
AGCTCTGTGGCTCCAATGAGCCTTGTGTGCTGTATTTCCAAGTGTTAATGAAAAACCCCACGCAGTTTTT
ACAAATTGAGCTCCAGGTCAGGGATATAAATGATCACTCTCCCGTCTTCTTGGAAAAAGAAATGCTCTTA
GAAATCCCAGAGAACAGTCCTGTTGGTGCTGTGTTCTTGCTTGAAAGTGCAAAGGATTTAGATGTAGGAA
TCAATGCTGTAAAAAGCTACACAATAAATCCGAACTCTCATTTCCACGTTAAAATAAGAGTCAATCCAGA
CAATAGGAAATACCCTGAGTTAGTTCTGGACAAGGCGCTGGATTATGAAGAGCGCCCGGAGCTCAGTTTC
ATCCTCACTGCTCTGGATGGCGGGTCCCCTCCCAGGTCTGGAACTGCCTTGGTCAGGGTGGTGGTTGTAG
ATATTAATGACAACTCCCCTGAGTTTGAGCAGGCTTTTTATGAGGTGAAGATTCTGGAGAATAGCATCCT
TGGCTCCCTGGTTGTGACCGTCTCAGCCTGGGATTTAGACTCTGGAACAAACAGTGAACTATCCTATACC
TTTTCCCATGCCTCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGTGACATTACTTTAA
CAGCACCTTTGGATTTTGAAGCAATTGAGTCATACTCAATAATCATTCAAGCCACAGATGGGGGAGGACT
TTTTGGAAAATCTACAGTCAGAATTCAGGTGATGGATGTAAACGACAACGCTCCTGAAATCACTGTGTCA
TCAATTACCAGTCCAATCCCAGAAAACACTCCAGAGACTGTGGTTATGGTTTTCAGGATACGAGACAGAG
ACTCTGGGGACAACGGAAAGATGGTTTGTTCTATCCCGGAGGACATCCCATTCGTGCTAAAATCTTCGGT
AAATAATTACTACACTTTGGAAACAGAGAGACCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACC
ATCACCGTCACCGACTTGGGGACCCCCAGGCTAAAAACCGAGCACAACATAACCGTGCTGGTCTCCGACG
TCAATGACAACGCCCCCGCCTTCACCCAAACTTCCTACGCCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATCGGCAGCATCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCAACTACTCGCTG
CTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGT
TTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGGGTTCCAGTTCCGCGTGGGCGCCACAGACCACGG
CTCCCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCTGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG
CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGC
CCCGGCCCAGGCCCAGGCCGACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGCTC
TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTC
GCTGCTCGGTGCCTGAGGGCCCCTTTCCAGGACATCTGGTGGACGTGAGTGGCACCGGGACCCTGTCCCA
GAGCTACCACTATGAGGTGTGTGTGACTGGAGGCTCCAGGTCAAATAAGTTCAAATTTCTGAAACCAATT
ATCCCCAACTTCCTACCCCAGAGCACAGGTAGTGAAGTCGAAGAAAATCCCCCATTTCAGAATAATTTGG
GTTTCTGA

Translation (795 aa):
MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSND
NKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSPVFLEKEMLL
EIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKYPELVLDKALDYEERPELSF
ILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYT
FSHASEDIRKTFEINQKSGDITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVS
SITSPIPENTPETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT
ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSL
LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSL
FLFSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPI
IPNFLPQSTGSEVEENPPFQNNLGF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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