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Report for CCDS54913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54913.1 Public Homo sapiens 5 PCDHA1 24 110 108 CCDS HistoryNCBI Gene:56147Re-query CCDS DB by CCDS ID:54913.1Re-query CCDS DB by GeneID:56147See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504120.4 ENSP00000420840.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504120.4Link to Ensembl Protein Viewer:ENSP00000420840.3Re-query CCDS DB by Nucleotide ID:ENST00000504120Re-query CCDS DB by Protein ID:ENSP00000420840
Original member Current member NCBI NM_018900.4 NP_061723.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018900.4Link to Protein Sequence:NP_061723.1Re-query CCDS DB by Nucleotide ID:NM_018900Re-query CCDS DB by Protein ID:NP_061723Link to BLAST:NP_061723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061723.1 950 Q9Y5I3-1 950 100% 0 0

Chromosomal Locations for CCDS 54913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140786291 140788684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGTGTTTTCTAGGAGAGGGGGCCTGGGAGCCCGGGATCTGCTTCTTTGGCTTCTGCTCCTCGCAGCCT
GGGAGGTGGGGAGCGGCCAGCTCCACTACTCGATCCCGGAGGAAGCCAAACACGGCACCTTCGTTGGCCG
CGTTGCTCAGGACCTGGGACTGGAGCTGGCGGAGCTGGTGCCTCGCCTGTTCCGGGTGGCGTCCAAAACA
CACAGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGATCGCGAGG
AGCTGTGCCAGTGGAGCGCGGAGTGCAGCATCCACCTGGAGTTGATCGCCGACAGGCCGCTGCAGGTTTT
CCATGTGGAGGTGAAGGTGAAAGACATTAACGATAATCCACCCGTCTTCAGGGGCAGAGAACAAATAATA
TTTATTCCTGAATCTAGACTCCTGAATTCGCGTTTTCCGATAGAAGGAGCTGCTGATGCAGACATTGGTG
CTAACGCTCTTCTAACGTACACGCTCAGCCCGAGTGATTATTTCTCTTTGGATGTAGAGGCAAGTGATGA
ACTGAGTAAATCTCTTTGGCTTGAATTGAGAAAATATTTGGATAGAGAAGAAACACCAGAACTTCACTTA
TTACTGACTGCCACTGATGGGGGCAAACCGGAGCTGCAAGGTACAGTTGAGCTGCTGATCACCGTCCTCG
ACGTTAATGATAACGCCCCACTGTTTGACCAGGCCGTATACAGAGTCCACTTGTTAGAGACTACAGCAAA
TGGAACATTAGTGACCACATTAAATGCCTCTGATGCTGACGAAGGTGTAAATGGTGAAGTCGTCTTTTCC
TTTGACAGTGGTATTTCTCGTGACATTCAAGAAAAATTCAAAGTTGATTCCAGCTCAGGAGAAATTAGGT
TAATTGATAAACTGGATTATGAAGAAACAAAATCCTACGAAATTCAAGTAAAGGCAGTTGATAAAGGAAG
TCCTCCGATGTCAAATCACTGTAAGGTTTTGGTGAAAGTGCTGGATGTAAATGATAATGCTCCAGAACTG
GCGGTCACTTCATTGTATTTGCCTATCAGAGAGGACGCTCCACTCAGCACCGTCATCGCCCTCATCACCG
TGTCTGACCGTGACTCAGGTGCCAACGGGCAGGTGACTTGCTCCTTAATGCCCCACGTCCCCTTCAAGCT
GGTGTCCACCTTCAAGAATTACTACTCGTTGGTGTTGGACAGCGCCCTGGATCGCGAGAGCCTGTCGGTC
TATGAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACGGCCAGGGTGTCCGTGG
AGGTGGCCGACGTGAATGACAACGCGCCTGCGTTCGCGCAGCCCGAGTACACAGTATTCGTGAAGGAGAA
CAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTG
TCCTATTCGCTGGTGGAACGGCGGGTGGGCGAGCGCGCGCTGTCGAACTACGTGTCAGTGCACGCGGAGA
GCGGCAAGGTGTACGCACTGCAGCCCCTGGACCACGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGC
GCGGGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC
AACGCGCCGGCGCTGCTGGCGCCTCGAGTGGGTGGCACTATTGGTGCAGTCAGTGAGCTGGTGCCGCGAT
TGGTGGGTGCGGGTCATGTGGTGGCGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCT
GTCCTATGAACTGCAGCCGGCAGCAGGCGGCGCGCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAG
ATCAGCACGACTCGTGTCCTGGACGAGGCTGACTTGTCGCGCTACCGCCTTCTGGTGCTAGTGAAGGATC
ACGGTGAGCCGGCGCTGACAGCCACGGCCACTGTGCTTGTATCTCTGGTGGAGAGCGGCCAGGCGCCAAA
GGCGTCTTCGCGGGCGTCGGTGGGTGTCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTACCTG
ATCATCGCCATCTGCGCGGTGTCCAGCCTGCTGGTGCTCACACTGCTGCTGTACACGGCGCTGCGGTGCT
CAGTGCCGCCCACTGAGGGTGCGTATGTGCCGGGCAAGCCCACTCTGGTGTGCTCCAGCGCGTTGGGGAG
CTGGTCGAACTCACAGCAGAGGCGGCAGAGGGTGTGCTCTAGCGAGGGCCCACCCAAGACCGACCTCATG
GCCTTCAGCCCAGGCCTATCTCCAAGTCTTAACACGTCAGAAAGAAATGAACAACCAGAAGCAAATTTGG
ATCTTTCTGGTAATCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCA
CAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA
ACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACA
GCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAA
ATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA
AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA
CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAGTGA

Translation (950 aa):
MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASKT
HRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVEVKVKDINDNPPVFRGREQII
FIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELSKSLWLELRKYLDREETPELHL
LLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFS
FDSGISRDIQEKFKVDSSSGEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPEL
AVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALV
SYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDEND
NAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGARIPFRVGLYTGE
ISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYL
IIAICAVSSLLVLTLLLYTALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLM
AFSPGLSPSLNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDK
SDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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