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Report for CCDS45009.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45009.2 Public Homo sapiens 12 TMEM132C 24 110 108 CCDS HistoryNCBI Gene:92293Re-query CCDS DB by CCDS ID:45009.2See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 45009.1
This CCDS ID was withdrawn because the CDS was partial, and there is insufficient transcript or protein evidence to predict its full-length nature.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45009.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435159.3 ENSP00000410852.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435159.3Link to Ensembl Protein Viewer:ENSP00000410852.2Re-query CCDS DB by Nucleotide ID:ENST00000435159Re-query CCDS DB by Protein ID:ENSP00000410852
Original member Current member NCBI NM_001136103.3 NP_001129575.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136103.3Link to Protein Sequence:NP_001129575.2Re-query CCDS DB by Nucleotide ID:NM_001136103Re-query CCDS DB by Protein ID:NP_001129575Link to BLAST:NP_001129575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129575.2 1108 Q8N3T6 1108 100% 0 0

Chromosomal Locations for CCDS 45009.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 128267403 128267487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128414732 128415620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128543957 128544103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128616152 128616335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128669417 128669560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128693829 128694034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128695830 128696103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128697224 128697415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128705090 128706295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3327 nt):
ATGCGCTCCGAGGGTGCGGCCCCCGGGCCGGCGGCGCCGCTGTGCGGGGCGCTGAGCCTGCTGCTGGGCG
CGCTGCTGGGCAAAGTGATAGAGGGTCACGGGGTCACAGACAACATACAGAGATTCTCCTCACTGCCACC
TTACCTACCTGTGAGCTACCACATCCTCAGAGCAGAGACCTCCTTCTTCCTCAAGGAAGCCAACCAGGAC
CTGCTGCGGAACTCCAGCCTGCAGGCGAGGGTGGAGTCCTTCTTTACCTACAAAACCAGGCAGCCCCCAG
TGCTCAATGCCAGCTATGGACCCTTTTCTGTGGAGAAGGTTGTGCCTCTGGACTTGATGTTGACTTCAAA
CTTTTTAGGTCCAACCAATAAGTTTAGTTTTGATTGGAAACTAAAAGCCCACATCCTGCGGGACAAAGTC
TACCTGAGCCGGCCCAAAGTGCAGGTTCTTTTCCACATCATGGGCAGAGACTGGGATGACCACGGCGCCG
GGGAGAAGCTGCCATGCCTGAGGGTCTTTGCTTTCCGAGAAACCAGAGAGGTGCGGGGCAGCTGCCGGCT
GAAGGGGGACCTGGGGCTGTGTGTGGCTGAGCTGGAGCTCCTGTCCAGCTGGTTCAGTGCCCCGACGGTG
GGTGCCGGGAGGAAGAAGTCCATGGACCAGCCGGAGGGGACCCCTGTGGAGCTCTACTACACCGTGCACC
CAGGAAACGAGCGAGGGGACTGTGCCGGGGGTGACTTCAGGAAGGGCAACGCCATCCGTCCAGGAAAGGA
TGGGCTGGAGGAAACCACGTCCCACCTGCAGAGGATCGGCACCGTCGGCCTTTACCGGGCCCAGGACAGC
GCCCAGCTCAGCGAGCTGCGTTTGGATGGTAACGTGGTCATCTGGCTGCCTTCCAGGCCAGTCAAGCAGG
GAGAGGTGGTCACGGCCTATGTCACCATCTCGAGCAATTCCTCTGTGGACCTCTTCATCTTGAGAGCCAA
GGTGAAGAAGGGGGTGAACATCCTGAGTGCTCAGACCCGTGAGCCCCGGCAGTGGGGCGTCAAGCAGGAG
GTGGGCAGCGGCGGAAAGCACGTGACGGCCACCGTGGCCTGCCAGCGCCTGGGGCCCAGCCCACGCAACA
GGAGCAGCAGTTTATTCAATGAGGTTGTGCAGATGAACTTTGAAATAGCCAGTTTCAGCAGCCTTTCAGG
GACTCAGCCCATCACGTGGCAGGTGGAGTACCCACGGAAGGGGACCACAGACATCGCCGTGTCCGAGATC
TTTGTCAGCCAGAAGGACCTGGTGGGCATCGTTCCCTTGGCTATGGACACTGAAATTCTGAACACCGCCG
TACTCACAGGAAAGACAGTTGCCATGCCTATCAAGGTGGTCTCTGTGGAGGAGAACAGTGCCGTGATGGA
CATCTCAGAGTCGGTGGAGTGCAAGTCCACAGACGAGGACGTTATCAAAGTGTCTGAGCGCTGTGACTAC
ATCTTTGTCAATGGCAAAGAGATCAAAGGAAAGATGGATGCGGTGGTGAACTTCACATACCAGTACCTGA
GCGCCCCCCTGTGTGTCACCGTGTGGGTGCCCCGGCTGCCCCTGCAGATCGAGGTCTCTGACACGGAGCT
CAGCCAGATAAAGGGCTGGAGGGTCCCCATTGTGACCAATAAGAGGCCCACTCGTGAGAGCGAGGATGAG
GACGAGGAGGAGCGGCGGGGCCGGGGCTGCGCACTGCAATACCAGCACGCCACCGTGCGGGTCCTCACCC
AGTTTGTGTCTGAGGGCGCCGGTCCATGGGGCCAGCCGAACTACCTGCTTAGTCCTAACTGGCAGTTCGA
CATCACTCACCTGGTGGCAGACTTCATGAAGCTGGAGGAACCTCACGTGGCCACCCTCCAGGACAGCCGG
GTCCTGGTTGGGCGAGAGGTTGGGATGACGACCATCCAGGTGTTGTCTCCACTGTCTGACTCCATCCTGG
CAGAGAAGACAATAACCGTGCTAGATGACAAAGTATCGGTGACAGACTTGGCCATCCAGCTCGTGGCTGG
GCTGTCTGTCGCCCTTTACCCCAACGCAGAAAACAGCAAGGCCGTAACAGCTGTGGTCACAGCTGAGGAG
GTGCTGCGGACCCCCAAACAGGAGGCTGTATTCAGCACGTGGCTGCAGTTCAGTGATGGCTCTGTGACGC
CCCTGGACATCTACGACACCAAGGACTTCTCCCTGGCAGCCACCTCCCAGGACGAGGCTGTCGTGTCAGT
CCCCCAGCCCCGCTCTCCCAGGTGGCCCGTTGTGGTGGCCGAAGGGGAAGGCCAGGGCCCACTGATCCGA
GTGGACATGACGATCGCCGAGGCCTGCCAGAAATCTAAACGCAAGAGCATCCTGGCTGTGGGCGTCGGCA
ACGTCAGGGTCAAGTTCGGACAGAACGATGCTGACTCCAGCCCCGGCGGGGACTATGAGGAAGATGAGAT
CAAGAACCACGCCAGCGACCGCCGGCAGAAGGGCCAGCACCATGAGCGCACAGGCCAAGATGGGCACCTC
TATGGCAGCTCTCCCGTGGAGCGTGAGGAAGGGGCTCTCCGAAGAGCCACTACCACGGCCAGGTCCCTGC
TGGACAACAAAGTGGTGAAGAACAGTCGGGCAGACGGGGGCAGGCTGGCAGGAGAGGGGCAGCTGCAGAA
CATCCCCATTGACTTCACCAACTTCCCTGCCCACGTGGACCTCCCCAAGGCCGGGAGTGGGCTGGAGGAA
AACGACCTGGTGCAGACTCCGCGGGGCCTGAGTGATCTGGAGATAGGGATGTACGCCCTCCTGGGGGTGT
TCTGCCTGGCCATCCTCGTCTTCCTGATCAACTGCGCCACCTTTGCCCTGAAGTACAGGCACAAGCAAGT
GCCCCTGGAAGGTCAGGCCTCCATGACCCACTCTCACGACTGGGTGTGGCTTGGCAATGAGGCCGAACTC
CTGGAGAGCATGGGGGATGCGCCGCCGCCCCAGGACGAGCACACCACCATCATAGACCGCGGACCGGGGG
CCTGCGAGGAGAGCAACCATCTCCTGCTCAATGGTGGCTCCCACAAGCACGTGCAGAGCCAGATTCACAG
GTCAGCCGACTCCGGGGGGCGGCAGGGCAGAGAACAGAAGCAGGACCCCCTGCACTCGCCCACCTCCAAG
AGGAAGAAGGTGAAATTTACCACCTTTACCACCATCCCCCCGGACGACAGCTGCCCCACGGTGAACTCCA
TCGTCAGCAGCAATGATGAGGACATCAAATGGGTGTGTCAAGACGTGGCTGTGGGTGCCCCCAAGGAACT
TAGAAACTATCTGGAGAAACTCAAAGATAAGGCTTAG

Translation (1108 aa):
MRSEGAAPGPAAPLCGALSLLLGALLGKVIEGHGVTDNIQRFSSLPPYLPVSYHILRAETSFFLKEANQD
LLRNSSLQARVESFFTYKTRQPPVLNASYGPFSVEKVVPLDLMLTSNFLGPTNKFSFDWKLKAHILRDKV
YLSRPKVQVLFHIMGRDWDDHGAGEKLPCLRVFAFRETREVRGSCRLKGDLGLCVAELELLSSWFSAPTV
GAGRKKSMDQPEGTPVELYYTVHPGNERGDCAGGDFRKGNAIRPGKDGLEETTSHLQRIGTVGLYRAQDS
AQLSELRLDGNVVIWLPSRPVKQGEVVTAYVTISSNSSVDLFILRAKVKKGVNILSAQTREPRQWGVKQE
VGSGGKHVTATVACQRLGPSPRNRSSSLFNEVVQMNFEIASFSSLSGTQPITWQVEYPRKGTTDIAVSEI
FVSQKDLVGIVPLAMDTEILNTAVLTGKTVAMPIKVVSVEENSAVMDISESVECKSTDEDVIKVSERCDY
IFVNGKEIKGKMDAVVNFTYQYLSAPLCVTVWVPRLPLQIEVSDTELSQIKGWRVPIVTNKRPTRESEDE
DEEERRGRGCALQYQHATVRVLTQFVSEGAGPWGQPNYLLSPNWQFDITHLVADFMKLEEPHVATLQDSR
VLVGREVGMTTIQVLSPLSDSILAEKTITVLDDKVSVTDLAIQLVAGLSVALYPNAENSKAVTAVVTAEE
VLRTPKQEAVFSTWLQFSDGSVTPLDIYDTKDFSLAATSQDEAVVSVPQPRSPRWPVVVAEGEGQGPLIR
VDMTIAEACQKSKRKSILAVGVGNVRVKFGQNDADSSPGGDYEEDEIKNHASDRRQKGQHHERTGQDGHL
YGSSPVEREEGALRRATTTARSLLDNKVVKNSRADGGRLAGEGQLQNIPIDFTNFPAHVDLPKAGSGLEE
NDLVQTPRGLSDLEIGMYALLGVFCLAILVFLINCATFALKYRHKQVPLEGQASMTHSHDWVWLGNEAEL
LESMGDAPPPQDEHTTIIDRGPGACEESNHLLLNGGSHKHVQSQIHRSADSGGRQGREQKQDPLHSPTSK
RKKVKFTTFTTIPPDDSCPTVNSIVSSNDEDIKWVCQDVAVGAPKELRNYLEKLKDKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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