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Report for CCDS34145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34145.1 Public Homo sapiens 5 LMBRD2 24 110 108 CCDS HistoryNCBI Gene:92255Re-query CCDS DB by CCDS ID:34145.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296603.5 ENSP00000296603.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296603.5Link to Ensembl Protein Viewer:ENSP00000296603.4Re-query CCDS DB by Nucleotide ID:ENST00000296603Re-query CCDS DB by Protein ID:ENSP00000296603
Original member Current member NCBI NM_001007527.2 NP_001007528.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007527.2Link to Protein Sequence:NP_001007528.1Re-query CCDS DB by Nucleotide ID:NM_001007527Re-query CCDS DB by Protein ID:NP_001007528Link to BLAST:NP_001007528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007528.1 695 Q68DH5 695 100% 0 0

Chromosomal Locations for CCDS 34145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36104046 36104106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36105068 36105197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36108534 36108639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36109945 36109991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36111155 36111258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36114424 36114521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36115015 36115120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36116460 36116593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36117735 36117916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36122280 36122463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36122848 36122961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36124191 36124265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36136309 36136519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36137274 36137441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36141107 36141202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36142502 36142599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36143176 36143349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGAGTGGTGCAGCTTTGGGACTTGAGATTGTTTTTGTCTTTTTTCTGGCATTATTTCTGCTTCATCGAT
ATGGAGACTTTAAGAAACAGCATAGACTTGTGATTATTGGAACACTGCTTGCTTGGTATCTCTGCTTTCT
TATTGTCTTCATACTGCCTCTGGATGTTAGTACGACAATATACAACCGGTGCAAGCATGCTGCTGCAAAT
TCAAGCCCTCCTGAGAATAGCAACATTACAGGATTGTACGCAACTGCTAACCCTGTTCCAAGCCAGCATC
CTTGTTTCAAGCCATGGAGTTACATTCCTGATGGAATCATGCCAATTTTCTGGAGGGTAGTGTATTGGAC
GTCACAATTTTTAACATGGATTCTCTTACCTTTTATGCAGTCATATGCAAGATCAGGAGGGTTTTCCATC
ACTGGAAAGATCAAAACTGCACTAATTGAGAATGCAATCTACTATGGCACCTATTTGCTGATTTTTGGAG
CATTTTTAATTTATGTAGCTGTAAACCCACATTTACATTTAGAATGGAACCAGCTTCAGACAATTGGGAT
AGCTGCTGCAAATACATGGGGTCTGTTTCTTCTTGTGTTGTTGTTGGGGTATGGCTTGGTGGAAATTCCT
CGATCATACTGGAATGGAGCAAAAAGGGGTTATCTACTTATGAAAACGTATTTTAAGGCAGCCAAACTGA
TGACAGAGAAAGCAGATGCAGAAGAGAATTTGGAAGATGCCATGGAGGAGGTTCGTAAAGTGAATGAAAG
CATCAAGTATAATCACCCATTGAGAAAATGTGTTGATACAATACTTAAAAAGTGCCCTACAGAGTATCAG
GAAAAAATGGGTAGGAACATGGATGATTATGAAGATTTTGATGAAAAGCATAGTATCTATCCAAGTGAAA
AAAGTCTGGTAAAACTGCATAAACAGGTGATTTATTCAGTTCAGAGACACCGTCGAACTCAAGTACAATG
GCAGATTCTTTTGGAACAAGCATTTTATCTAGAAGATGTAGCAAAAAATGAAACTAGTGCTACTCATCAG
TTTGTTCACACCTTTCAATCGCCAGAGCCAGAAAATCGATTTATCCAATATTTTTATAATCCTACATTTG
AATGGTACTGGGAATGTCTTTTGCGACCATGGTTTTACAAGATACTTGCTGTGGTTCTGTCCATCTTCTC
TGTGATTGTTGTGTGGTCAGAGTGCACATTCTTTAGCACTACTCCTGTCTTATCCCTCTTTGCGGTCTTC
ATACAGCTGGCAGAAAAAACATATAATTATATTTATATCGAGATTGCCTGCTTCCTTTCCATCTTCTTCC
TAAGTATCTGTGTTTATTCTACTGTGTTCAGGATTCGTGTATTTAACTATTATTATTTGGCCTCACATCA
CCAGACTGATGCTTATAGCCTTCTTTTCAGTGGCATGCTATTTTGCCGTTTGACACCTCCTTTATGTCTT
AATTTCTTGGGTTTGACCCATATGGATTCATCTATCTCTCACAAGAATACTCAACCAACTGCTTATACAT
CTATTATGGGTTCCATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGGT
GGTAATTCTCTGCATTGCTACTTATTTTAGTTTGGGAACCCGTTGTTTGAATCTGCTCGGTTTCCAGCAG
TTTATGGGAGATGATGATATGACATCAGACTTAGTTAATGAAGGAAAAGAATTAATCAGAAAAGAGAAGA
GAAAAAGGCAAAGGCAAGAAGAAGGTGAAAATCGAAGAAGAGAATGGAAAGAACGTTATGGACACAATAG
AGAAGATTCCACTAGGAACAGAAATATTCATACTGACCCCAAAGAGTCAAACTTCTCAGATGTTAATACC
AACCGTTCTGCATTCAAATATACCAGGGCTAATAACAGGACTGAAAGGGACCGGATAGAACTTCTCCAAG
ATGCAGAACCTTTGGATTTTAATGCAGAAACATTCACTGATGATCCTCTTGAATCTGAATCAGGAAGGTA
TCAGCCTGGTGGACGATATCTCTCGATGTCTCGCAGTGACATATTTAATGATGTTTAA

Translation (695 aa):
MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCKHAAAN
SSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSI
TGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWNQLQTIGIAAANTWGLFLLVLLLGYGLVEIP
RSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQ
EKMGRNMDDYEDFDEKHSIYPSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQ
FVHTFQSPEPENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVF
IQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCL
NFLGLTHMDSSISHKNTQPTAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLNLLGFQQ
FMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTRNRNIHTDPKESNFSDVNT
NRSAFKYTRANNRTERDRIELLQDAEPLDFNAETFTDDPLESESGRYQPGGRYLSMSRSDIFNDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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