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Report for CCDS11995.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11995.2 Public Homo sapiens 18 DSEL 24 110 108 CCDS HistoryNCBI Gene:92126Re-query CCDS DB by CCDS ID:11995.2See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 11995.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11995.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310045.9 ENSP00000310565.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310045.9Link to Ensembl Protein Viewer:ENSP00000310565.8Re-query CCDS DB by Nucleotide ID:ENST00000310045Re-query CCDS DB by Protein ID:ENSP00000310565
Original member Current member NCBI NM_032160.3 NP_115536.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032160.3Link to Protein Sequence:NP_115536.2Re-query CCDS DB by Nucleotide ID:NM_032160Re-query CCDS DB by Protein ID:NP_115536Link to BLAST:NP_115536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115536.2 1212 Q8IZU8 1212 100% 0 0

Chromosomal Locations for CCDS 11995.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67510970 67514608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3639 nt):
ATGGCGTTAATGTTTACAGGACATTTACTATTCTTAGCATTATTGATGTTTGCTTTCTCTACTTTTGAGG
AATCTGTGAGCAATTATTCCGAATGGGCAGTTTTCACAGATGATATAGATCAGTTTAAAACACAGAAAGT
GCAAGATTTCAGACCCAACCAAAAGCTGAAGAAAAGTATGCTTCATCCAAGTTTATATTTTGATGCTGGA
GAAATCCAAGCAATGAGACAAAAGTCTCGTGCAAGCCATTTGCATCTTTTTAGAGCTATCAGAAGTGCAG
TGACAGTTATGCTGTCCAACCCAACATACTACCTACCTCCACCAAAGCATGCTGATTTTGCTGCCAAGTG
GAATGAAATTTATGGTAACAATCTGCCTCCTTTAGCATTGTACTGTTTGTTATGCCCAGAAGACAAAGTT
GCCTTTGAATTTGTCTTGGAATATATGGACAGGATGGTTGGCTACAAAGACTGGCTAGTAGAGAATGCAC
CAGGAGATGAGGTTCCAATTGGCCATTCCTTAACAGGTTTTGCCACTGCCTTTGACTTTTTATATAACTT
ATTAGATAATCATCGAAGACAAAAATACCTGGAAAAAATATGGGTTATTACTGAGGAAATGTACGAGTAT
TCCAAGGTCCGCTCATGGGGCAAACAGCTTCTCCATAACCACCAAGCCACTAATATGATAGCATTACTCA
CAGGGGCCTTGGTGACTGGAGTAGATAAAGGATCTAAAGCAAATATATGGAAACAGGCTGTAGTGGATGT
CATGGAAAAGACAATGTTTCTATTGAATCATATTGTTGATGGTTCTTTGGATGAAGGTGTGGCCTATGGA
AGCTACACAGCTAAATCCGTCACACAGTATGTTTTTCTGGCCCAGCGCCATTTTAATATCAACAACTTGG
ATAATAACTGGTTAAAGATGCACTTTTGGTTCTATTATGCCACCCTTTTACCTGGCTTCCAAAGAACTGT
GGGTATAGCAGATTCCAATTATAATTGGTTTTATGGTCCAGAAAGCCAGCTAGTTTTCTTGGATAAGTTC
ATCTTAAAGAATGGAGCTGGAAATTGGTTAGCTCAGCAAATTAGAAAGCACCGACCTAAAGATGGACCGA
TGGTTCCTTCAACTGCCCAAAGGTGGAGTACTCTTCACACTGAATACATCTGGTATGATCCCCAGCTCAC
ACCACAGCCACCTGCTGATTATGGTACTGCAAAAATACACACATTCCCTAACTGGGGTGTGGTTACTTAT
GGGGCTGGGTTGCCAAACACACAGACCAACACCTTTGTGTCTTTTAAATCTGGGAAGCTGGGGGGACGAG
CTGTGTATGACATAGTTCATTTTCAGCCATATTCCTGGATTGATGGGTGGAGAAGTTTTAACCCAGGACA
TGAGCATCCAGATCAGAACTCATTTACTTTTGCCCCCAATGGACAAGTATTTGTTTCTGAAGCTCTCTAT
GGACCCAAGTTGAGCCACCTTAACAATGTATTGGTGTTTGCTCCATCACCCTCAAGCCAGTGTAATAAGC
CCTGGGAAGGTCAACTGGGAGAATGTGCGCAGTGGCTTAAGTGGACTGGCGAGGAGGTTGGTGATGCAGC
TGGGGAAATAATCACTGCCTCTCAACATGGGGAAATGGTATTTGTGAGTGGGGAAGCCGTGTCTGCTTAT
TCTTCAGCAATGAGACTGAAAAGTGTATATCGTGCTTTGCTTCTCTTAAATTCCCAAACTCTGCTAGTTG
TTGATCATATTGAGAGGCAAGAAGATTCCCCAATAAATTCTGTCAGTGCCTTCTTTCATAATTTGGATAT
TGATTTTAAATATATCCCATATAAGTTTATGAATAGGTATAATGGTGCCATGATGGATGTGTGGGATGCA
CATTACAAAATGTTTTGGTTTGATCATCATGGCAATAGTCCCATGGCCAGTATACAGGAAGCAGAGCAAG
CTGCTGAATTTAAAAAACGATGGACTCAATTTGTTAATGTTACTTTTCAGATGGAACCCACAATCACAAG
AATTGCATATGTCTTTTATGGGCCATATATCAATGTCTCCAGCTGCAGATTTATTGATAGTTCCAATCCT
GGACTTCAGATTTCTCTCAATGTCAATAATACTGAACATGTTGTTTCTATTGTAACTGATTACCATAACC
TGAAGACAAGATTCAATTATCTGGGATTCGGTGGCTTTGCCAGTGTGGCTGATCAAGGCCAAATAACCCG
ATTTGGTTTGGGCACTCAAGCAATAGTAAAGCCTGTAAGACATGATAGGATTATTTTCCCCTTTGGATTT
AAATTTAATATAGCAGTTGGATTAATTTTGTGCATTAGCTTGGTGATTTTAACTTTCCAATGGCGTTTTT
ACCTTTCTTTTAGAAAACTAATGCGATGGATATTAATACTTGTTATTGCCTTGTGGTTTATTGAGCTTTT
GGATGTGTGGAGCACTTGTAGTCAGCCCATTTGTGCAAAATGGACAAGGACAGAGGCTGAGGGAAGCAAG
AAGTCTTTGTCTTCTGAAGGGCACCACATGGATCTTCCTGATGTTGTCATTACCTCACTTCCTGGTTCAG
GAGCTGAAATTCTCAAACAACTTTTTTTCAACAGTAGTGATTTTCTCTACATCAGGGTTCCTACAGCCTA
CATTGATATTCCTGAAACTGAGTTGGAAATCGACTCATTTGTAGATGCTTGTGAATGGAAGGTGTCAGAT
ATCCGCAGTGGGCATTTTCGTTTACTCCGAGGCTGGTTGCAGTCTTTAGTCCAGGACACAAAATTACATT
TGCAAAACATCCATCTGCATGAACCCAATAGGGGTAAACTGGCCCAATATTTTGCAATGAATAAGGACAA
AAAAAGAAAATTTAAAAGGAGAGAGTCTTTGCCAGAACAAAGAAGTCAAATGAAAGGCGCCTTTGATAGA
GATGCTGAATATATTAGGGCTTTGAGGAGACACCTGGTTTACTATCCAAGTGCACGTCCTGTGCTCAGTT
TAAGCAGTGGAAGCTGGACGTTAAAGCTTCATTTTTTTCAGGAAGTTTTAGGAGCTTCGATGAGGGCATT
GTACATAGTAAGAGACCCTCGGGCATGGATTTATTCAATGTTGTACAATAGTAAACCAAGTCTTTATTCT
TTGAAGAATGTACCAGAGCATTTAGCAAAATTGTTTAAAATAGAGGGAGGTAAAGGCAAATGTAACTTAA
ATTCGGGTTATGCTTTCGAGTATGAACCATTGAGGAAAGAATTATCAAAATCCAAATCAAATGCAGTGTC
CCTCTTGTCTCACTTGTGGCTAGCAAATACAGCAGCAGCCTTGAGAATAAATACAGATTTGCTGCCTACT
AGCTACCAGCTGGTCAAGTTTGAAGATATTGTGCATTTTCCTCAGAAAACTACTGAAAGGATTTTTGCCT
TTCTTGGAATTCCTTTGTCTCCTGCTAGTTTAAACCAAATATTGTTTGCCACCTCTACAAACCTTTTTTA
CCTTCCCTATGAAGGGGAAATATCACCAACTAATACTAATGTTTGGAAACAGAACTTGCCTAGAGATGAA
ATTAAACTAATTGAAAACATCTGCTGGACTCTGATGGATCGCCTAGGATATCCAAAGTTTATGGACTAA

Translation (1212 aa):
MALMFTGHLLFLALLMFAFSTFEESVSNYSEWAVFTDDIDQFKTQKVQDFRPNQKLKKSMLHPSLYFDAG
EIQAMRQKSRASHLHLFRAIRSAVTVMLSNPTYYLPPPKHADFAAKWNEIYGNNLPPLALYCLLCPEDKV
AFEFVLEYMDRMVGYKDWLVENAPGDEVPIGHSLTGFATAFDFLYNLLDNHRRQKYLEKIWVITEEMYEY
SKVRSWGKQLLHNHQATNMIALLTGALVTGVDKGSKANIWKQAVVDVMEKTMFLLNHIVDGSLDEGVAYG
SYTAKSVTQYVFLAQRHFNINNLDNNWLKMHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDKF
ILKNGAGNWLAQQIRKHRPKDGPMVPSTAQRWSTLHTEYIWYDPQLTPQPPADYGTAKIHTFPNWGVVTY
GAGLPNTQTNTFVSFKSGKLGGRAVYDIVHFQPYSWIDGWRSFNPGHEHPDQNSFTFAPNGQVFVSEALY
GPKLSHLNNVLVFAPSPSSQCNKPWEGQLGECAQWLKWTGEEVGDAAGEIITASQHGEMVFVSGEAVSAY
SSAMRLKSVYRALLLLNSQTLLVVDHIERQEDSPINSVSAFFHNLDIDFKYIPYKFMNRYNGAMMDVWDA
HYKMFWFDHHGNSPMASIQEAEQAAEFKKRWTQFVNVTFQMEPTITRIAYVFYGPYINVSSCRFIDSSNP
GLQISLNVNNTEHVVSIVTDYHNLKTRFNYLGFGGFASVADQGQITRFGLGTQAIVKPVRHDRIIFPFGF
KFNIAVGLILCISLVILTFQWRFYLSFRKLMRWILILVIALWFIELLDVWSTCSQPICAKWTRTEAEGSK
KSLSSEGHHMDLPDVVITSLPGSGAEILKQLFFNSSDFLYIRVPTAYIDIPETELEIDSFVDACEWKVSD
IRSGHFRLLRGWLQSLVQDTKLHLQNIHLHEPNRGKLAQYFAMNKDKKRKFKRRESLPEQRSQMKGAFDR
DAEYIRALRRHLVYYPSARPVLSLSSGSWTLKLHFFQEVLGASMRALYIVRDPRAWIYSMLYNSKPSLYS
LKNVPEHLAKLFKIEGGKGKCNLNSGYAFEYEPLRKELSKSKSNAVSLLSHLWLANTAAALRINTDLLPT
SYQLVKFEDIVHFPQKTTERIFAFLGIPLSPASLNQILFATSTNLFYLPYEGEISPTNTNVWKQNLPRDE
IKLIENICWTLMDRLGYPKFMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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