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Report for CCDS12672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12672.1 Public Homo sapiens 19 QPCTL 24 110 108 CCDS HistoryNCBI Gene:54814Re-query CCDS DB by CCDS ID:12672.1Re-query CCDS DB by GeneID:54814See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000012049.10 ENSP00000012049.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000012049.10Link to Ensembl Protein Viewer:ENSP00000012049.4Re-query CCDS DB by Nucleotide ID:ENST00000012049Re-query CCDS DB by Protein ID:ENSP00000012049
Original member Current member NCBI NM_017659.4 NP_060129.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017659.4Link to Protein Sequence:NP_060129.2Re-query CCDS DB by Nucleotide ID:NM_017659Re-query CCDS DB by Protein ID:NP_060129Link to BLAST:NP_060129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060129.2 382 Q9NXS2-1 382 100% 0 0

Chromosomal Locations for CCDS 12672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45692704 45692910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45693413 45693556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45695437 45695718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45698547 45698699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45698801 45698900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45701798 45701914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45702904 45703049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGCGTTCCGGGGGCCGCGGGCGACCCCGCCTGCGGCTGGGGGAACGTGGCCTCATGGAGCCACTCTTGC
CGCCGAAGCGCCGCCTGCTACCGCGGGTTCGGCTCTTGCCTCTGTTGCTGGCGCTGGCCGTGGGCTCGGC
GTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGAGGAGCTGCCGCTGGGCCGGGAGCTGCGGGTC
CCATTGATCGGAAGCCTCCCCGAAGCCCGGCTGCGGAGGGTGGTGGGACAACTGGATCCACAGCGTCTCT
GGAGCACTTATCTGCGCCCCCTGCTGGTTGTGCGAACCCCGGGCAGCCCGGGAAATCTCCAAGTCAGAAA
GTTCCTGGAGGCCACGCTGCGGTCCCTGACAGCAGGTTGGCACGTGGAGCTGGATCCCTTCACAGCCTCA
ACACCCCTGGGGCCAGTGGACTTTGGCAATGTGGTGGCCACACTGGACCCAAGGGCTGCCCGTCACCTCA
CCCTTGCCTGCCATTATGACTCGAAGCTCTTCCCACCCGGATCGACCCCCTTTGTAGGGGCCACGGATTC
GGCTGTGCCCTGTGCCCTGCTGCTGGAGCTGGCCCAAGCACTTGACCTGGAGCTGAGCAGGGCCAAAAAA
CAGGCAGCCCCGGTGACCCTGCAACTGCTCTTCTTGGATGGTGAAGAGGCGCTGAAGGAGTGGGGACCCA
AGGACTCCCTTTACGGTTCCCGGCACCTGGCCCAGCTCATGGAGTCTATACCTCACAGCCCCGGCCCCAC
CAGGATCCAGGCTATTGAGCTCTTTATGCTTCTTGATCTCCTGGGAGCCCCCAATCCCACCTTCTACAGC
CACTTCCCTCGCACGGTCCGCTGGTTCCATCGGCTGAGGAGCATTGAGAAGCGTCTGCACCGTTTGAACC
TGCTGCAGTCTCATCCCCAGGAAGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTGTGGAAGACGA
CCACATCCCCTTCCTCCGCAGAGGGGTACCCGTGCTCCATCTCATCTCCACGCCCTTCCCTGCTGTCTGG
CACACCCCTGCGGACACCGAGGTCAATCTCCACCCACCCACGGTACACAACTTGTGCCGCATTCTCGCTG
TGTTCCTGGCTGAATACCTGGGGCTCTAG

Translation (382 aa):
MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTEELPLGRELRV
PLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFLEATLRSLTAGWHVELDPFTAS
TPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPPGSTPFVGATDSAVPCALLLELAQALDLELSRAKK
QAAPVTLQLLFLDGEEALKEWGPKDSLYGSRHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYS
HFPRTVRWFHRLRSIEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVW
HTPADTEVNLHPPTVHNLCRILAVFLAEYLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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