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Report for CCDS2276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2276.1 Public Homo sapiens 2 IFT70A 24 110 108 CCDS HistoryNCBI Gene:92104Re-query CCDS DB by CCDS ID:2276.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355689.6 ENSP00000347915.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355689.6Link to Ensembl Protein Viewer:ENSP00000347915.4Re-query CCDS DB by Nucleotide ID:ENST00000355689Re-query CCDS DB by Protein ID:ENSP00000347915
Original member Current member NCBI NM_152275.4 NP_689488.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152275.4Link to Protein Sequence:NP_689488.3Re-query CCDS DB by Nucleotide ID:NM_152275Re-query CCDS DB by Protein ID:NP_689488Link to BLAST:NP_689488.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689488.3 665 Q86WT1 665 100% 0 0

Chromosomal Locations for CCDS 2276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 177616704 177618701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGCTGGTCTGAGCGGCGCGCAGATCCCCGACGGGGAGTTTACCGCGCTAGTGTACCGGCTCATCCGCG
ATGCCCGCTACGCCGAGGCGGTGCAGCTGCTGGGCCGAGAACTGCAGCGGAGCCCCAGGAGCCGTGCCGG
CCTGTCGCTGCTAGGCTACTGCTACTACCGCCTGCAGGAGTTCGCGCTGGCGGCCGAGTGCTATGAGCAG
CTGGGCCAGCTGCACCCGGAACTGGAGCAGTACCGCCTGTACCAGGCCCAGGCCCTGTACAAGGCCTGCC
TTTATCCGGAGGCCACTCGGGTCGCCTTCCTTCTCCTGGATAACCCCGCCTACCACAGCCGGGTCCTCCG
CCTGCAAGCTGCCATCAAGTATAGCGAGGGCGATCTGCCAGGGTCCAGGAGCCTGGTGGAGCAGCTGCTG
AGTGGGGAAGGGGGAGAAGAAAGTGGAGGCGACAATGAGACCGATGGCCAGGTCAACCTGGGTTGTTTGC
TCTACAAGGAGGGACAGTATGAAGCTGCATGCTCCAAGTTTTCTGCCACACTGCAGGCCTCGGGCTACCA
GCCTGACCTTTCCTACAACCTGGCTTTGGCCTATTACAGCAGCCGACAGTATGCCTCAGCACTGAAGCAT
ATCGCTGAGATTATTGAGCGTGGCATCCGCCAGCATCCTGAGCTAGGTGTGGGCATGACCACCGAGGGCT
TTGATGTTCGCAGTGTTGGCAACACCTTAGTTCTCCATCAGACTGCTCTGGTGGAAGCCTTCAACCTTAA
GGCAGCCATAGAATACCAACTGAGAAACTATGAGGTAGCTCAAGAAACCCTCACCGACATGCCACCCAGG
GCAGAGGAAGAGTTGGACCCTGTGACCCTGCACAACCAGGCACTAATGAACATGGATGCCAGGCCTACAG
AAGGGTTTGAAAAGCTACAGTTTTTGCTCCAACAGAATCCCTTTCCTCCAGAGACTTTTGGCAACCTGTT
GCTGCTCTACTGTAAATATGAGTATTTTGACCTGGCAGCAGATGTCCTGGCAGAAAATGCCCATTTGACG
TATAAGTTCCTCACACCCTATCTCTATGACTTCTTAGATGCCCTGATCACTTGCCAGACAGCTCCTGAAG
AGGCTTTCATTAAGCTTGATGGGCTAGCAGGGATGCTGACTGAGCAGCTTCGGAGACTCACCAAGCAAGT
ACAGGAAGCAAGACACAACAGAGATGATGAAGCTATCAAAAAGGCAGTGAATGAATATGATGAAACCATG
GAGAAATACATTCCTGTGTTGATGGCTCAGGCAAAAATCTACTGGAATCTTGAAAATTATCCAATGGTGG
AAAAGGTCTTCCGCAAATCTGTGGAATTCTGTAACGACCATGATGTGTGGAAGTTGAATGTGGCTCATGT
TCTGTTCATGCAGGAAAACAAATACAAAGAAGCCATTGGTTTCTATGAACCCATAGTCAAGAAGCATTAT
GATAACATCCTGAATGTCAGTGCTATTGTACTGGCTAATCTCTGTGTTTCCTATATTATGACAAGTCAAA
ATGAAGAAGCAGAGGAGTTGATGAGGAAGATTGAAAAGGAGGAAGAGCAGCTCTCTTATGATGACCCAAA
TCGGAAAATGTACCATCTCTGCATTGTGAATTTGGTGATAGGAACTCTTTATTGTGCCAAAGGAAACTAT
GAGTTTGGTATTTCTCGAGTTATCAAAAGCTTGGAGCCTTATAATAAAAAGCTGGGAACAGATACCTGGT
ATTATGCCAAAAGATGCTTCCTGTCCTTGTTAGAAAACATGTCAAAACACATGATAGTCATTCATGACAG
TGTTATTCAAGAATGTGTCCAGTTTTTAGGACACTGTGAACTTTATGGCACAAACATACCTGCTGTTATT
GAACAACCCCTCGAAGAAGAAAGAATGCATGTTGGGAAGAATACAGTCACAGATGAGTCCAGACAATTGA
AAGCTTTGATTTATGAGATTATAGGATGGAATAAGTAG

Translation (665 aa):
MAGLSGAQIPDGEFTALVYRLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQ
LGQLHPELEQYRLYQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSLVEQLL
SGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALKH
IAEIIERGIRQHPELGVGMTTEGFDVRSVGNTLVLHQTALVEAFNLKAAIEYQLRNYEVAQETLTDMPPR
AEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLT
YKFLTPYLYDFLDALITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEAIKKAVNEYDETM
EKYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHY
DNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKMYHLCIVNLVIGTLYCAKGNY
EFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKHMIVIHDSVIQECVQFLGHCELYGTNIPAVI
EQPLEEERMHVGKNTVTDESRQLKALIYEIIGWNK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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