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Report for CCDS4309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4309.1 Public Homo sapiens 5 MYOZ3 24 110 108 CCDS HistoryNCBI Gene:91977Re-query CCDS DB by CCDS ID:4309.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297130.4 ENSP00000297130.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297130.4Link to Ensembl Protein Viewer:ENSP00000297130.4Re-query CCDS DB by Nucleotide ID:ENST00000297130Re-query CCDS DB by Protein ID:ENSP00000297130
Original member Current member EBI ENST00000517768.6 ENSP00000428815.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517768.6Link to Ensembl Protein Viewer:ENSP00000428815.1Re-query CCDS DB by Nucleotide ID:ENST00000517768Re-query CCDS DB by Protein ID:ENSP00000428815
Original member Current member NCBI NM_001122853.3 NP_001116325.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122853.3Link to Protein Sequence:NP_001116325.1Re-query CCDS DB by Nucleotide ID:NM_001122853Re-query CCDS DB by Protein ID:NP_001116325Link to BLAST:NP_001116325.1
Original member Current member NCBI NM_133371.5 NP_588612.2 Accepted alive Link to Nucleotide Sequence:NM_133371.5Link to Protein Sequence:NP_588612.2Re-query CCDS DB by Nucleotide ID:NM_133371Re-query CCDS DB by Protein ID:NP_588612Link to BLAST:NP_588612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116325.1 251 Q8TDC0-1 251 100% 0 0
NP_588612.2 251 Q8TDC0-1 251 100% 0 0

Chromosomal Locations for CCDS 4309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150662942 150663002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150670484 150670638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150671597 150671650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150671755 150671908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150672340 150672502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150676707 150676875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGATCCCCAAGGAGCAGAAGGGGCCAGTGATGGCTGCCATGGGGGACCTCACTGAACCAGTCCCTACGC
TGGACCTGGGCAAGAAGCTGAGCGTGCCCCAGGACCTGATGATGGAGGAGCTGTCACTACGCAACAACAG
AGGGTCCCTCCTCTTCCAGAAGAGGCAGCGCCGTGTGCAGAAGTTCACTTTCGAGTTAGCAGCCAGCCAG
CGGGCGATGCTGGCCGGAAGCGCCAGGAGGAAGGTGACTGGAACAGCGGAGTCGGGGACGGTTGCCAATG
CCAATGGCCCTGAGGGGCCGAACTACCGCTCGGAGCTCCACATCTTCCCGGCCTCACCCGGGGCCTCACT
CGGGGGTCCCGAGGGCGCCCACCCTGCAGCCGCCCCTGCTGGGTGCGTCCCCAGCCCCAGCGCCCTGGCG
CCAGGCTATGCGGAGCCGCTGAAGGGCGTCCCGCCAGAGAAGTTCAACCACACCGCCATCTCCAAGGGCT
ACCGCTGCCCTTGGCAGGAGTTCGTCAGCTACCGGGACTACCAGAGCGATGGCCGAAGTCACACCCCCAG
CCCCAACGACTACCGAAATTTCAACAAGACCCCGGTGCCATTTGGAGGACCCCTCGTGGGGGGCACTTTT
CCCAGGCCAGGCACCCCCTTCATCCCGGAGCCCCTCAGTGGCTTGGAACTCCTCCGTCTCAGACCCAGCT
TCAACAGAGTGGCCCAGGGCTGGGTCCGTAACCTCCCAGAGTCCGAGGAGCTGTAG

Translation (251 aa):
MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKFTFELAASQ
RAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALA
PGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGGPLVGGTF
PRPGTPFIPEPLSGLELLRLRPSFNRVAQGWVRNLPESEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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