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Report for CCDS16852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16852.1 Public Mus musculus 2 Cst3 23 108 98 CCDS HistoryNCBI Gene:13010Re-query CCDS DB by CCDS ID:16852.1Re-query CCDS DB by GeneID:13010See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028938.6 ENSMUSP00000028938.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028938.6Link to Ensembl Protein Viewer:ENSMUSP00000028938.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028938Re-query CCDS DB by Protein ID:ENSMUSP00000028938
Original member Current member NCBI NM_009976.4 NP_034106.2 Accepted alive Link to Nucleotide Sequence:NM_009976.4Link to Protein Sequence:NP_034106.2Re-query CCDS DB by Nucleotide ID:NM_009976Re-query CCDS DB by Protein ID:NP_034106Link to BLAST:NP_034106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034106.2 140 P21460 140 100% 0 0

Chromosomal Locations for CCDS 16852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148871960 148872043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148872817 148872930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148875153 148875377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCCAGCCCGCTGCGCTCCTTGCTGTTCCTGCTGGCCGTCCTGGCCGTGGCCTGGGCGGCGACCCCAA
AACAAGGCCCGCGAATGTTGGGAGCCCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGCGGCGAGCGTT
GGACTTCGCTGTGAGCGAGTACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGCCATACAGGTGGTG
AGAGCTCGTAAGCAGCTCGTGGCTGGAGTGAACTATTTTTTGGATGTGGAGATGGGCCGAACTACATGTA
CCAAGTCCCAGACAAATTTGACTGACTGTCCTTTCCATGACCAGCCCCATCTGATGAGGAAGGCACTCTG
CTCCTTCCAGATCTACAGCGTGCCCTGGAAAGGCACACACTCCCTGACAAAATTCAGCTGCAAAAATGCC
TAA

Translation (140 aa):
MASPLRSLLFLLAVLAVAWAATPKQGPRMLGAPEEADANEEGVRRALDFAVSEYNKGSNDAYHSRAIQVV
RARKQLVAGVNYFLDVEMGRTTCTKSQTNLTDCPFHDQPHLMRKALCSFQIYSVPWKGTHSLTKFSCKNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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