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Report for CCDS8353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8353.1 Public Homo sapiens 11 C11orf52 24 110 108 CCDS HistoryNCBI Gene:91894Re-query CCDS DB by CCDS ID:8353.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278601.6 ENSP00000278601.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278601.6Link to Ensembl Protein Viewer:ENSP00000278601.5Re-query CCDS DB by Nucleotide ID:ENST00000278601Re-query CCDS DB by Protein ID:ENSP00000278601
Original member Current member NCBI NM_080659.3 NP_542390.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080659.3Link to Protein Sequence:NP_542390.2Re-query CCDS DB by Nucleotide ID:NM_080659Re-query CCDS DB by Protein ID:NP_542390Link to BLAST:NP_542390.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542390.2 123 Q96A22 123 100% 0 0

Chromosomal Locations for CCDS 8353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111918973 111919004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111924326 111924363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111925653 111925714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111925960 111926199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGGAAACCGGGTCTGCTGCGGAGGAAGCTGGAGCTGCCCATCAACTTTCCAGAAGAAAAAGAAAACAG
GAAGCCAAACAAGACGGACACTGAAGCCGCAGCCACAACAGCTGCAGCAGAATCTCCCAAAGGGCCATGA
AACAACAGGACATACGTATGAACGGGTGTTACAGCAGCAAGGGTCTCAAGAGAGGAGTCCAGGCCTCATG
TCGGAAGACAGCAACTTACATTATGCTGACATTCAAGTGTGCAGCCGTCCCCATGCCCGGGAAGTGAAAC
ACGTGCATTTAGAAAACGCTACAGAGTATGCGACCCTTCGCTTCCCCCAGGCCACACCTCGCTATGACAG
CAAGAACGGGACCCTGGTGTGA

Translation (123 aa):
MGNRVCCGGSWSCPSTFQKKKKTGSQTRRTLKPQPQQLQQNLPKGHETTGHTYERVLQQQGSQERSPGLM
SEDSNLHYADIQVCSRPHAREVKHVHLENATEYATLRFPQATPRYDSKNGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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