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Report for CCDS38664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38664.1 Public Mus musculus 3 Mcoln2 23 108 98 CCDS HistoryNCBI Gene:68279Re-query CCDS DB by CCDS ID:38664.1Re-query CCDS DB by GeneID:68279See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098524.4 ENSMUSP00000096125.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098524.4Link to Ensembl Protein Viewer:ENSMUSP00000096125.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098524Re-query CCDS DB by Protein ID:ENSMUSP00000096125
Original member Current member NCBI NM_001005846.2 NP_001005846.1 Accepted alive Link to Nucleotide Sequence:NM_001005846.2Link to Protein Sequence:NP_001005846.1Re-query CCDS DB by Nucleotide ID:NM_001005846Re-query CCDS DB by Protein ID:NP_001005846Link to BLAST:NP_001005846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005846.1 538 Q8K595-2 538 100% 0 0

Chromosomal Locations for CCDS 38664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146163542 146163694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146169932 146170105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146171953 146172106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146175457 146175541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146175657 146175753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146176511 146176610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146180159 146180271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146181706 146181855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146183467 146183568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146183674 146183796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146190260 146190466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146192228 146192349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146194755 146194791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGCGTCTCTCGATTCTGAGGTGAGGGAAGAGTGTCTGAGGGAAGACCTGAAGTTCTACTTCATGAGTC
CCTGTGAGAAGTACCGAGCCAGACGTCAGATCCCGTGGAAACTGGGCTTGCAGATATTGAAGATAGTCAT
GGTAACCACACAGCTTGTTCGGTTTGGCTTAAGTAACCAGTTGGTGGTGGCTTTCAAAGAAGATAACACT
GTTGCTTTTAAGCACTTGTTTTTGAAAGGATTTTCTGGAGTTGATGAAGATGACTACAGCTGTAGCATAT
ACACTCAGGAGAACACCTATGAGAGCATCTTTTTTGCTATAAAGCAGTATCGTCATCTGAAGAATATTTC
CCTGGCAACCCTTGGTTATGGAGAAAGTGAAGACAATAGAACTGGCTTGAAGGTCTGTAAGCAGCACTAC
AAGACAGGGGCCATGTTTTCTTCTAACGAGACCCTGAACATTGACAGTGACATTGAGACAGACTGCATTC
ACCTGGACCTTCAGGTGCTCACCACGGAACCCGAGGACTGGGCACAGACATCTTTCTTCAGGCTGGATTT
TTATCGGCTCGTGCAAGTTGATATCTCCTTTGCCCTCAAAGGAATTGACCTACAGGCAGTTCATTCCCGA
GAGATACCGGACTGTTACCTCTTTCAGAATACGATTACCTTCGACAACACAGCCCACAGTGGGAAAATCA
AAATCTATCTCAACAGCGAGGCCAACATCGAAGAGTGTAAAAACATGAACATATCTGGGTCTACTCAGAG
AAGCACTCACTACCTCCTGGTGTTTGATGTGTTCGTCATTATGATCTGCCTGGCATCCCTTATCCTGTGC
ACGAGATCCATTGTTCTTGCTCTGAGGCTGAGGAAGAGATTTCTAAACTTCTTCCTGGAGAAGTACAAAC
AGCGCGTGTGTGGCGCTGACCAGTGGGAATTCGTCAACGGATGGTACGTCCTGGTCACTATCAGCGACCT
CATGACAATAATTGGATCCATATTGAAGATGGAAATCAAAGCCAAGAAGCTCACAAACTATGACGTGTGC
AGCATCTTGCTCGGGACGTCGACGCTCTTTGTCTGGGTTGGAGTCATCAGATATCTGGGTTACTTTCAGA
CGTACAACGTGCTCATTTTAACCATGCAAGCCTCACTGCCCAAAGTTCTCCGGTTCTGTGCTTGCGCTGG
CATGATCTACCTGGGGTACACCTTCTGCGGCTGGATTGTCTTAGGACCGTACCACGAGAAGTTTGAAAAC
CTGAACATAGTCGCTGAATGCCTGTTTTCTCTGGTCAACGGCGATGACATGTTTGCCACGTTCGCTCAGA
TCCAGCAGAAGAGCATTCTGGTGTGGCTGTTCAGCCGCCTCTACCTGTATTCCTTTATCAGCCTATTCAT
TTACATGGTCCTCAGCCTCTTCATCGCGCTCATCACCGACTCTTACCACACCATTAAGAAGTACCAGCAG
CATGGGTTTCCTGAAACAGATCTGCAGAAATTCCTGAAGGAGAGCGGAAGCAAAGATGGGTACCAGAAGC
AGCCATCGGCCTTGCTGTCCTGCCTCTGCTGTCTGAGGAGGAGAAGAAGCAATGACCACTTGATTCTCAT
TGACTAA

Translation (538 aa):
MASLDSEVREECLREDLKFYFMSPCEKYRARRQIPWKLGLQILKIVMVTTQLVRFGLSNQLVVAFKEDNT
VAFKHLFLKGFSGVDEDDYSCSIYTQENTYESIFFAIKQYRHLKNISLATLGYGESEDNRTGLKVCKQHY
KTGAMFSSNETLNIDSDIETDCIHLDLQVLTTEPEDWAQTSFFRLDFYRLVQVDISFALKGIDLQAVHSR
EIPDCYLFQNTITFDNTAHSGKIKIYLNSEANIEECKNMNISGSTQRSTHYLLVFDVFVIMICLASLILC
TRSIVLALRLRKRFLNFFLEKYKQRVCGADQWEFVNGWYVLVTISDLMTIIGSILKMEIKAKKLTNYDVC
SILLGTSTLFVWVGVIRYLGYFQTYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHEKFEN
LNIVAECLFSLVNGDDMFATFAQIQQKSILVWLFSRLYLYSFISLFIYMVLSLFIALITDSYHTIKKYQQ
HGFPETDLQKFLKESGSKDGYQKQPSALLSCLCCLRRRRSNDHLILID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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