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Report for CCDS1808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1808.1 Public Homo sapiens 2 COX7A2L 24 110 108 CCDS HistoryNCBI Gene:9167Re-query CCDS DB by CCDS ID:1808.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000234301.3 ENSP00000234301.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000234301.3Link to Ensembl Protein Viewer:ENSP00000234301.2Re-query CCDS DB by Nucleotide ID:ENST00000234301Re-query CCDS DB by Protein ID:ENSP00000234301
Original member Current member EBI ENST00000378669.5 ENSP00000367938.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378669.5Link to Ensembl Protein Viewer:ENSP00000367938.1Re-query CCDS DB by Nucleotide ID:ENST00000378669Re-query CCDS DB by Protein ID:ENSP00000367938
Original member Current member NCBI NM_001319036.1 NP_001305965.1 Accepted alive Link to Nucleotide Sequence:NM_001319036.1Link to Protein Sequence:NP_001305965.1Re-query CCDS DB by Nucleotide ID:NM_001319036Re-query CCDS DB by Protein ID:NP_001305965Link to BLAST:NP_001305965.1
Original member Current member NCBI NM_004718.4 NP_004709.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004718.4Link to Protein Sequence:NP_004709.2Re-query CCDS DB by Nucleotide ID:NM_004718Re-query CCDS DB by Protein ID:NP_004709Link to BLAST:NP_004709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305965.1 114 O14548 114 100% 0 0
NP_004709.2 114 O14548 114 100% 0 0

Chromosomal Locations for CCDS 1808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 42351219 42351359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 42353212 42353343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 42361090 42361161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGTACTACAAGTTTAGTGGCTTCACGCAGAAGTTGGCAGGAGCATGGGCTTCGGAGGCCTATAGCCCGC
AGGGATTAAAGCCTGTGGTTTCCACAGAAGCACCACCTATCATATTTGCCACACCAACTAAACTGACCTC
CGATTCCACAGTGTATGATTATGCTGGGAAAAACAAAGTTCCAGAGCTACAAAAGTTTTTCCAGAAAGCT
GATGGTGTGCCCGTCTACCTGAAACGAGGCCTGCCTGACCAAATGCTTTACCGGACCACCATGGCGCTGA
CTGTGGGAGGGACCATCTACTGCCTGATCGCCCTCTACATGGCTTCGCAGCCCAAAAACAAATGA

Translation (114 aa):
MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKA
DGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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