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Report for CCDS10500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10500.1 Public Homo sapiens 16 TIGD7 24 110 108 CCDS HistoryNCBI Gene:91151Re-query CCDS DB by CCDS ID:10500.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396862.2 ENSP00000380071.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396862.2Link to Ensembl Protein Viewer:ENSP00000380071.1Re-query CCDS DB by Nucleotide ID:ENST00000396862Re-query CCDS DB by Protein ID:ENSP00000380071
Original member Current member NCBI NM_033208.4 NP_149985.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033208.4Link to Protein Sequence:NP_149985.2Re-query CCDS DB by Nucleotide ID:NM_033208Re-query CCDS DB by Protein ID:NP_149985Link to BLAST:NP_149985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149985.2 549 Q6NT04-1 549 100% 0 0

Chromosomal Locations for CCDS 10500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3298965 3300614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGAATAAGAGAGGGAAATATACAACACTGAATTTGGAGGAGAAAATGAAGGTTCTAAGTAGAATTGAAG
CTGGACGATCACTTAAAAGTGTAATGGATGAATTTGGAATCAGTAAGTCAACATTTTATGACATTAAAAA
AAATAAGAAGTTAATTCTGGACTTTGTACTGAAGCAGGACATGCCATTAGTAGGGGCTGAGAAGAGAAAG
AGGACAACGGGAGCCAAATATGGTGATGTAGATGATGCGGTCTACATGTGGTACCAACAGAAACGCTCAG
CCGGTGTTCCGGTAAGAGGCGTGGAGCTTCAGGCTGCTGCAGAGAGATTTGCACGGTGTTTTGGGCGAAC
AGATTTCAAAGCTAGCACTGGTTGGCTTTTTAGATTTCGAAATCGGCATGCAATTGGGAACCGAAAAGGA
TGTGGGGAACAAGTCCTAAGTTCAGTTTCTGAAAATGTTGAGCCATTTCGACAAAAACTGTCCATGATAA
TCAAAGAGGAGAAACTGTGTCTAGCTCAGCTATACAGTGGGGATGAAACAGACCTCTTTTGGAAGTCAAT
GCCAGAAAATTCTCAGGCAAGTAGGAAAGATATCTGCCTACCAGGGAAGAAAATAAACAAAGAAAGGTTG
TCTGCCTTTTTATGTGCAAATGCAGACGGAACTCATAAATTAAAGTCAATCATTATTGGAAAATCAAAAC
TGCCCAAAAGTGTGAAAGAGGACACAAGTACATTGCCTGTGATATATAAACCCAGTAAAGATGTTTGGTT
CACCAGAGAATTGTTTTCAGAATGGTTTTTTCAAAACTTTGTTCCTGAGGTCCGACATTTTCAACTTAAT
GTTCTAAGATTTCATGACGAGGACGTCAGGGCATTGTTACTTCTGGACAGTTGCCCGGCTCATCCTTCCT
CTGAATCCCTAACCAGTGAGGATGGTCGAATAAAATGTATGTTCTTCCCCCATAACACTTCAACCTTGAT
TCAACCAATGAATCAAGGTGTGATCTTGAGCTGCAAACGGCTGTATAGATGGAAGCAACTTGAAGAGAGT
CTTGTAATATTTGAAGAAAGTGATGATGAGCAAGAGAAAGGAGATAAAGGAGTTTCCAAAATTAAAATCT
ACAATATAAAAAGTGCAATTTTTAACTGGGCAAAAAGTTGGGAAGAAGTAAAACAAATAACCATAGCAAA
TGCATGGGAAAATCTTCTTTACAAAAAGGAACCTGAATATGATTTTCAAGGCTTAGAACATGGGGATTAT
AGAGAAATTCTTGAAAAATGTGGGGAGTTGGAAACTAAGTTGGATGATGATAGGGTGTGGTTAAATGGAG
ATGAAGAAAAGGGTTGTCTCCTAAAAACCAAAGGTGGAATAACAAAGGAAGTTGTTCAAAAAGGAGGAGA
AGCTGAGAAGCAGACTGCTGAATTTAAATTATCTGCTGTAAGAGAGAGTTTGGACTACCTTCTTGACTTT
GTTGATGCCACACCTGAGTTTCAGAGATTCCACTTCACACTGAAAGAGATGCAACAAGAAATAGTCAAGA
AACAGTTCCAGAGTAAAATCCATTCTAGAATTGGTAGCTTTTTGAAACCTAGGCCTCATAATATTAAGGA
CTCCTTCAGTGGGCCTTCAACTTCTGGTTCTAATCATTAG

Translation (549 aa):
MNKRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLVGAEKRK
RTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFARCFGRTDFKASTGWLFRFRNRHAIGNRKG
CGEQVLSSVSENVEPFRQKLSMIIKEEKLCLAQLYSGDETDLFWKSMPENSQASRKDICLPGKKINKERL
SAFLCANADGTHKLKSIIIGKSKLPKSVKEDTSTLPVIYKPSKDVWFTRELFSEWFFQNFVPEVRHFQLN
VLRFHDEDVRALLLLDSCPAHPSSESLTSEDGRIKCMFFPHNTSTLIQPMNQGVILSCKRLYRWKQLEES
LVIFEESDDEQEKGDKGVSKIKIYNIKSAIFNWAKSWEEVKQITIANAWENLLYKKEPEYDFQGLEHGDY
REILEKCGELETKLDDDRVWLNGDEEKGCLLKTKGGITKEVVQKGGEAEKQTAEFKLSAVRESLDYLLDF
VDATPEFQRFHFTLKEMQQEIVKKQFQSKIHSRIGSFLKPRPHNIKDSFSGPSTSGSNH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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