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Report for CCDS41029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41029.1 Public Mus musculus X Dkc1 23 108 98 CCDS HistoryNCBI Gene:245474Re-query CCDS DB by CCDS ID:41029.1Re-query CCDS DB by GeneID:245474See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033776.14 ENSMUSP00000033776.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033776.14Link to Ensembl Protein Viewer:ENSMUSP00000033776.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033776Re-query CCDS DB by Protein ID:ENSMUSP00000033776
Original member Current member NCBI NM_001030307.2 NP_001025478.1 Accepted alive Link to Nucleotide Sequence:NM_001030307.2Link to Protein Sequence:NP_001025478.1Re-query CCDS DB by Nucleotide ID:NM_001030307Re-query CCDS DB by Protein ID:NP_001025478Link to BLAST:NP_001025478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025478.1 509 Q9ESX5 509 100% 0 0

Chromosomal Locations for CCDS 41029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75096112 75096127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75096834 75096901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75097283 75097369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75098462 75098553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75098763 75098947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75100030 75100094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75100433 75100559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75100990 75101120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75102422 75102565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75104340 75104460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75105654 75105772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75106278 75106381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75107172 75107250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75108179 75108304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75108696 75108761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCGGATGCAGAAGTAATTACATTCCCAAAGAAGCATAAGAAGAAAAAAGACCGGAAGCCATTACAAG
AAGATGATGTTGCCGAAATACAACATGCTGAAGAATTTCTTATCAAACCAGAATCTAAAGTGGCTCAATT
AGACACTTCTCAGTGGCCCTTGTTACTAAAGAATTTTGATAAGCTAAATGTAAGGACAGCACACTATACA
CCTCTTCCTTGTGGTTCAAATCCTCTGAAGAGGGAGATTGGGGACTATATCAGGACCGGTTTCATTAATC
TTGACAAGCCCTCTAACCCCTCTTCCCATGAGGTGGTAGCCTGGATCCGACGAATACTTCGGGTAGAGAA
GACTGGCCACAGTGGCACACTAGATCCCAAAGTGACTGGTTGTTTAATTGTGTGCATTGAACGAGCCACT
CGTTTGGTGAAATCACAACAGAGTGCAGGCAAAGAGTATGTTGGAATTGTCCGGCTGCACAATGCTATTG
AAGGGGGTACTCAGCTTTCTAGGGCCCTAGAAACTCTGACAGGTGCCCTGTTTCAGCGACCCCCACTTAT
TGCTGCAGTAAAGAGGCAGCTTCGAGTGAGGACTATCTACGAGAGCAAAATGATAGAATATGATCCTGAG
AGAAGATTAGGAATCTTTTGGGTAAGCTGTGAAGCTGGCACCTACATTCGGACACTATGCGTACACCTTG
GCTTGTTACTGGGAGTTGGTGGTCAGATGCAGGAACTTCGGAGGGTGCGTTCTGGAGTCATGAGTGAAAA
GGACCACATGGTGACAATGCATGATGTACTCGATGCTCAGTGGCTGTATGATAACCATAAGGATGAGAGT
TACTTGCGGCGTGTTGTTTACCCTTTGGAAAAGCTGTTGACATCTCATAAACGTCTGGTTATGAAAGATA
GTGCAGTGAATGCAATCTGCTATGGGGCCAAGATCATGCTTCCTGGTCTTCTTCGATATGAAGATGGCAT
TGAGGTCAACCAGGAGATTGTGGTCATTACTACTAAGGGGGAAGCTATCTGCATGGCAATTGCATTGATG
ACTACAGCAGTGATTTCTACCTGTGACCATGGTATAGTAGCCAAAATAAAGAGGGTGATCATGGAGAGAG
ACACTTATCCTCGCAAGTGGGGTTTAGGTCCAAAGGCAAGTCAGAAGAAGATGATGATCAAGCAGGGCCT
TCTGGACAAGCATGGCAAACCCACAGACAATACCCCTGCCACATGGAAACAGGATTACATTGACTATAGT
GATTCTGGCAAGAACACACTGGTTACCGAAGCAGTACAAGCCCCTCAGTTAGCTGCTGAAGCAGTAAATG
TCATAAAAAGGAAGCGGGATAGTGAGAGTGAAAGTGATGAGACCCCAACAGTTCCCCAGTTGAAGGAAAA
GAAGAAGAAGAAGGATAAGAAGCCCAAAACTGTGCTAGAAAGTGGGGGCGAAACTGGAGATGGGGACAAC
GACACCACCAAAAAGAAAAAGAAGAAGAAAGTAAAAGTGGTAGAAGAGATGTCTGAATAG

Translation (509 aa):
MADAEVITFPKKHKKKKDRKPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT
PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERAT
RLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPE
RRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDES
YLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALM
TTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYS
DSGKNTLVTEAVQAPQLAAEAVNVIKRKRDSESESDETPTVPQLKEKKKKKDKKPKTVLESGGETGDGDN
DTTKKKKKKKVKVVEEMSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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