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Report for CCDS80688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80688.1 Public Mus musculus 7 Fbxo17 23 108 98 CCDS HistoryNCBI Gene:50760Re-query CCDS DB by CCDS ID:80688.1Re-query CCDS DB by GeneID:50760See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108279.8 ENSMUSP00000103914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108279.8Link to Ensembl Protein Viewer:ENSMUSP00000103914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108279Re-query CCDS DB by Protein ID:ENSMUSP00000103914
Original member Current member NCBI NM_001310687.1 NP_001297616.1 Accepted alive Link to Nucleotide Sequence:NM_001310687.1Link to Protein Sequence:NP_001297616.1Re-query CCDS DB by Nucleotide ID:NM_001310687Re-query CCDS DB by Protein ID:NP_001297616Link to BLAST:NP_001297616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297616.1 242 Q9QZM8-2 242 100% 0 0

Chromosomal Locations for CCDS 80688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28732500 28732872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28733429 28733540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28735277 28735372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28736068 28736203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28737665 28737676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGGAGCGCGGCCCTCGCGACGGCAGATGACTGAAGCTCGGCGCCTGGCTCTAACCAAGCTGCCCCCTG
AGCTGCTGGTGCAGGTGCTGAGCCACGTGCCGCCTCGCGCGTTAGTGACCCGCTGCCGGCCAGTGTGCCG
GGCCTGGCGCGACCTGGTAGATGGCCCAAGTATATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAG
GGCAGAGCCCTCTACGCCTTGGCCCAGCGCTGTCCCGCCGACGCCGACGCCGACGCCGACGCCGACGGCA
ACCGCCACGACGAGTTCCCATTCTGCGCTCTGGCCCGATTCTGCCTGAGAGCGCCGTTTGGCCGCAACCT
CATCCACAACTCCTGCGGAGAACAGGGCTTCAGAGGTTGGGAAGTGGAGCACGGCGGAAATGGTTGGGCC
GTGGAAAAGAATTTGACGCTGGTACCAGGGGCTCCTTCCCAGACCTGCTTTGTGACTTCTTTTGAGTGGT
GCTCCAAGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTATGGCAGGAGCTGTTGGACAGTGGCCAGAT
TGAGATCTGCATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACCGGCTTCGAGTTCGC
CTACTGGATGAATATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTG
AGAGGAGCTGCCGACAAGGACTACCATGA

Translation (242 aa):
MGARPSRRQMTEARRLALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPSIWLLQLARDRSAE
GRALYALAQRCPADADADADADGNRHDEFPFCALARFCLRAPFGRNLIHNSCGEQGFRGWEVEHGGNGWA
VEKNLTLVPGAPSQTCFVTSFEWCSKRQLVDLVKEGVWQELLDSGQIEICIADWWGARENCGCIYRLRVR
LLDEYENEVVKFSASPNPVLQWTERSCRQGLP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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