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Report for CCDS79991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79991.1 Public Mus musculus 3 Csde1 23 108 98 CCDS HistoryNCBI Gene:229663Re-query CCDS DB by CCDS ID:79991.1Re-query CCDS DB by GeneID:229663See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79991.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199240.4 ENSMUSP00000143050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199240.4Link to Ensembl Protein Viewer:ENSMUSP00000143050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199240Re-query CCDS DB by Protein ID:ENSMUSP00000143050
Original member Current member NCBI NM_001310693.1 NP_001297622.1 Accepted alive Link to Nucleotide Sequence:NM_001310693.1Link to Protein Sequence:NP_001297622.1Re-query CCDS DB by Nucleotide ID:NM_001310693Re-query CCDS DB by Protein ID:NP_001297622Link to BLAST:NP_001297622.1

Chromosomal Locations for CCDS 79991.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103040031 103040042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103041145 103041242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043157 103043238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043557 103043685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043806 103043931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103044629 103044841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103046785 103046925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103047014 103047178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103049621 103049728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103050298 103050473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103051040 103051152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103052812 103052931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103054655 103054833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103055349 103055512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103056345 103056477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103056886 103056933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGAACGGACAAGAAGTATTTTATCTGACTTACACCTCTGAAGATGTGGAAGGGAATGTTCAGCTGGAAA
CTGGAGATAAAATTAACTTTGTAATTGATAACAATAAACACACTGGTGCTGTAAGTGCTCGTAATATTAT
GCTGTTGAAAAAGAAGCAGGCTCGCTGTCAAGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCTTTATC
GAAAGAGGTGATGTTGTAAAAGAGATATTCTTTCACTATAGTGAATTTAAAGGTGACCTAGAAACCCTAC
AGCCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACT
ATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTT
ATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCATTGCCAGGACGAATCAAAGTTGACTTTGTGATTC
CTAAAGAACTTCCCTTTGGAGACAAAGACACAAAATCCAAAGTGACCCTGCTGGAAGGTGACCATGTTAG
GTTTAATATTTCAACAGACCGACGTGACAAATTGGAACGAGCAACCAACATAGAGGTTCTATCAAATACA
TTTCAGTTCACTAATGAAGCCAGAGAGATGGGTGTGATTGCTGCCATGAGAGATGGTTTTGGTTTCATCA
AGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGAGATTCTAGATGGGAACCAGCTCCACAT
TGCAGATGAAGTAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATT
AAAAAACTTCCCAAGGGCACGGTTTCATTCCATTCCCATTCAGATCATCGTTTTCTGGGCACCGTAGAAA
AAGAAGCCACTTTTTCCAATCCTAAAACTACAAGCCCAAATAAAGGCAAAGACAAGGAGGCAGAAGATGG
CATTATAGCTTATGACGACTGTGGGGTGAAACTGACGATTGCTTTTCAAGCCAAGGATGTGGAAGGATCT
ACTTCTCCTCAAATAGGAGATAAGGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTG
CAACTTGCGTGAGACTTTTAGGTCGTAATTCTAACTCCAAACGTCTCTTGGGTTATGTGGCAACTCTGAA
AGATAATTTTGGATTTATAGAAACAGCTAATCATGATAAGGAAATATTTTTCCACTATAGTGAGTTCTCT
GGTGATGTTGATAGCCTGGAACTGGGAGACATGGTTGAATACAGCTTGTCCAAAGGCAAAGGCAATAAAG
TCAGTGCTGAGAAAGTAAACAAAGCCCACTCAGTGAATGGCATTACTGAGGAAGCTAATCCCACCATCTA
CTCTGGTAAAGTCATTCGCCCTCTGAGAGGTGTTGATCCAACACAGATTGAGTACCAAGGAATGATTGAG
ATTGTGGAGGAGGGGGATATGAAAGGTGAAGTGTATCCTTTTGGCATAGTTGGGATGGCCAACAAAGGGG
ATTGCCTACAGAAAGGGGAGAGTGTCAAGTTCCAGTTGTGTGTACTTGGCCAAAATGCACAAACTATGGC
CTACAACATCACACCCCTTCGTAGGGCTACTGTGGAGTGTGTGAAAGATCAGTTTGGCTTTATTAACTAT
GAAGTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGAAGTTCAGGATGGCGTTGAGCTACAGGCAG
GAGATGAGGTGGAATTCTCAGTGATCCTTAATCAGCGCACTGGGAAGTGCAGTGCCTGTAATGTCTGGCG
AGTCTGTGAAGGCCCCAAAGCTGTTGCAGCTCCTCGACCTGACCGGTTGGTCAATCGCCTAAAGAACATC
ACCCTGGATGATGCCAGTGCTCCACGTCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGG
GATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAA

Translation (668 aa):
MNGQEVFYLTYTSEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFI
ERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNT
FQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRI
KKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKDKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
TSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFS
GDVDSLELGDMVEYSLSKGKGNKVSAEKVNKAHSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQGMIE
IVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
EVGDSKKLFFHVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNI
TLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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