NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27288.1 Public Mus musculus 14 Ccdc122 23 108 98 CCDS HistoryNCBI Gene:108811Re-query CCDS DB by CCDS ID:27288.1Re-query CCDS DB by GeneID:108811See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048208.9 ENSMUSP00000036369.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048208.9Link to Ensembl Protein Viewer:ENSMUSP00000036369.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048208Re-query CCDS DB by Protein ID:ENSMUSP00000036369
Original member Current member NCBI NM_175369.4 NP_780578.1 Accepted alive Link to Nucleotide Sequence:NM_175369.4Link to Protein Sequence:NP_780578.1Re-query CCDS DB by Nucleotide ID:NM_175369Re-query CCDS DB by Protein ID:NP_780578Link to BLAST:NP_780578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780578.1 290 Q8BVN0 290 100% 0 0

Chromosomal Locations for CCDS 27288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77067908 77067953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77068837 77068949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77091668 77092066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77092770 77092886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77111407 77111604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTCAGGAGACACAGAAAGGAAGAATGAAGTCATTCCTACAAAAGCTGCAGTCAAAGACACATCTGCAT
TAACTGATGCTGTAGAGCAAGTCGCCAAACAACAACAGTCACAAACATCAGAAATAGAAAAACATAAAAA
AATTCTGTTCCAGTTGCAGATTGAACTTCATGAGCTTGAAAAACAAATAGCGACTATTGCTGAAGAAGCT
AAAGAAACAGACAGGCAAATGCATCGGCAAGATGCTGCAATGGAGAACTCTAAACTTCAGTGTGGACGCT
TAGAAGCTCAAATTGAGTCCTTATATTCAGAAAGTTTAAAACTTAAATTTGATACAGAAACAGCCCAAGA
AAAATTTGAGGAGCAAATGATAAAATATAATGCATATTATGTAAAAATAAAAGCTTATAAAGATAATTTA
GGAGAGATAAAAAGCCAATGTCCATTTATGACTGAACTCTATGAAAAACGAGATCTTATCAAAAACCTAA
AGACAATGAAAGAAGATCTTATGGAAAACCTCCAAGATTCACAAGGGAACTGCACAATACAAATACAGGA
AGACATTTCAGAGATAAAGAATAAAATTATGACAGTAAAAGAGTCAATCACTGAGAAAACGTCTTTTGTG
GAAGAAGAGAAAAAGACACATGAAAAATTAAGAAAAGAAATAGAGGTACAACATAAGAGATATGATGCAA
TTCTTAAGCGTTTGCATTGTCAGATGAACAAGATTCAGTTAAATAGGAGGAAGTGGCAATGGAACATCCA
ACAACTGGAAAAAACTGCAGCTGAGTTAAAAAAGCGGATCAGAGAGAAGGAAGCCAGTGAAATACAGAGC
AGGCCTGCAGCACCGTGGGAGAGAATACTGTGA

Translation (290 aa):
MSGDTERKNEVIPTKAAVKDTSALTDAVEQVAKQQQSQTSEIEKHKKILFQLQIELHELEKQIATIAEEA
KETDRQMHRQDAAMENSKLQCGRLEAQIESLYSESLKLKFDTETAQEKFEEQMIKYNAYYVKIKAYKDNL
GEIKSQCPFMTELYEKRDLIKNLKTMKEDLMENLQDSQGNCTIQIQEDISEIKNKIMTVKESITEKTSFV
EEEKKTHEKLRKEIEVQHKRYDAILKRLHCQMNKIQLNRRKWQWNIQQLEKTAAELKKRIREKEASEIQS
RPAAPWERIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH