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Report for CCDS3484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3484.1 Public Homo sapiens 4 OCIAD1 24 110 108 CCDS HistoryNCBI Gene:54940Re-query CCDS DB by CCDS ID:3484.1Re-query CCDS DB by GeneID:54940See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264312.12 ENSP00000264312.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264312.12Link to Ensembl Protein Viewer:ENSP00000264312.7Re-query CCDS DB by Nucleotide ID:ENST00000264312Re-query CCDS DB by Protein ID:ENSP00000264312
Original member Current member EBI ENST00000381473.7 ENSP00000370882.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381473.7Link to Ensembl Protein Viewer:ENSP00000370882.3Re-query CCDS DB by Nucleotide ID:ENST00000381473Re-query CCDS DB by Protein ID:ENSP00000370882
Original member Current member EBI ENST00000508293.5 ENSP00000423002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508293.5Link to Ensembl Protein Viewer:ENSP00000423002.1Re-query CCDS DB by Nucleotide ID:ENST00000508293Re-query CCDS DB by Protein ID:ENSP00000423002
Original member Current member EBI ENST00000513391.2 ENSP00000423909.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513391.2Link to Ensembl Protein Viewer:ENSP00000423909.2Re-query CCDS DB by Nucleotide ID:ENST00000513391Re-query CCDS DB by Protein ID:ENSP00000423909
Original member Current member NCBI NM_001079839.3 NP_001073308.1 Accepted alive Link to Nucleotide Sequence:NM_001079839.3Link to Protein Sequence:NP_001073308.1Re-query CCDS DB by Nucleotide ID:NM_001079839Re-query CCDS DB by Protein ID:NP_001073308Link to BLAST:NP_001073308.1
Original member Current member NCBI NM_017830.4 NP_060300.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017830.4Link to Protein Sequence:NP_060300.1Re-query CCDS DB by Nucleotide ID:NM_017830Re-query CCDS DB by Protein ID:NP_060300Link to BLAST:NP_060300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073308.1 245 Q9NX40-1 245 100% 0 0
NP_060300.1 245 Q9NX40-1 245 100% 0 0

Chromosomal Locations for CCDS 3484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48832625 48832682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48833401 48833481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48842636 48842689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48848399 48848446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48849947 48850082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48851806 48851975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48857213 48857365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48860725 48860762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGAATGGGAGGGCTGATTTTCGAGAGCCGAATGCAGAGGTTCCAAGACCAATTCCCCACATAGGGCCTG
ATTACATTCCAACAGAGGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCTTCTGGTTCAGATC
TGTGCCTTTGGCTGCAACAAGTATGTTGATTACTCAAGGATTAATTAGTAAAGGAATACTTTCAAGTCAT
CCCAAATATGGTTCCATCCCTAAACTTATACTTGCTTGTATCATGGGATACTTTGCTGGAAAACTTTCTT
ATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTTGAAAATTCCCCCCTTGGAGAAGCTTTACGATCAGG
ACAAGCACGACGATCTTCACCACCTGGGCACTATTATCAAAAGTCAAAATATGACTCAAGTGTGAGTGGT
CAATCATCTTTTGTGACATCCCCAGCAGCAGACAACATAGAAATGCTTCCTCATTATGAGCCAATTCCAT
TCAGTTCTTCTATGAATGAATCTGCTCCCACTGGTATTACTGATCATATTGTCCAAGGACCTGATCCCAA
CCTTGAAGAAAGTCCTAAAAGAAAAAATATTACATATGAGGAATTAAGGAATAAGAACAGAGAGTCATAT
GAAGTATCTTTAACACAAAAGACTGACCCCTCAGTCAGGCCTATGCATGAAAGAGTGCCAAAAAAAGAAG
TCAAAGTAAACAAGTATGGAGATACTTGGGATGAGTGA

Translation (245 aa):
MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSH
PKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSG
QSSFVTSPAADNIEMLPHYEPIPFSSSMNESAPTGITDHIVQGPDPNLEESPKRKNITYEELRNKNRESY
EVSLTQKTDPSVRPMHERVPKKEVKVNKYGDTWDE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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