NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43082.1 Public Homo sapiens 3 ELP6 24 110 108 CCDS HistoryNCBI Gene:54859Re-query CCDS DB by CCDS ID:43082.1Re-query CCDS DB by GeneID:54859See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296149.9 ENSP00000296149.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296149.9Link to Ensembl Protein Viewer:ENSP00000296149.4Re-query CCDS DB by Nucleotide ID:ENST00000296149Re-query CCDS DB by Protein ID:ENSP00000296149
Original member Current member NCBI NM_001031703.3 NP_001026873.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031703.3Link to Protein Sequence:NP_001026873.2Re-query CCDS DB by Nucleotide ID:NM_001031703Re-query CCDS DB by Protein ID:NP_001026873Link to BLAST:NP_001026873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026873.2 266 Q0PNE2-1 266 100% 0 0

Chromosomal Locations for CCDS 43082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 47496069 47496197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47498286 47498432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47501650 47501851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47504330 47504448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47510184 47510254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47511148 47511226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47513537 47513590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGTTCGTGGAACTTAATAACCTGCTTAACACCACCCCCGACAGGGCGGAGCAGGGGAAACTGACTCTAC
TCTGTGATGCCAAGACAGATGGGAGTTTCCTTGTACACCACTTTCTCTCCTTCTATCTCAAAGCTAATTG
TAAAGTCTGCTTTGTGGCACTCATCCAGTCCTTCAGCCACTACAGTATCGTGGGACAGAAGCTGGGTGTC
AGCCTGACCATGGCGCGGGAGCGTGGGCAGCTTGTGTTCCTTGAGGGACTCAAGTCTGCAGTGGACGTCG
TCTTCCAGGCTCAAAAGGAGCCACACCCCCTGCAGTTTCTCAGGGAGGCTAATGCTGGGAACTTGAAACC
ATTGTTTGAGTTTGTACGGGAGGCCCTGAAGCCAGTAGACAGTGGAGAGGCTCGGTGGACGTACCCGGTG
CTGTTGGTGGACGACCTCAGTGTGCTCCTGAGCCTGGGCATGGGGGCGGTGGCTGTGCTAGACTTCATTC
ACTACTGCAGAGCCACCGTGTGCTGGGAACTAAAGGGAAACATGGTGGTCCTTGTGCACGACAGTGGAGA
TGCGGAGGATGAGGAGAATGACATCCTGCTGAATGGCCTCAGTCATCAGAGCCATCTGATACTGCGGGCT
GAGGGCCTGGCCACTGGCTTCTGCAGGGATGTGCACGGGCAGCTGAGGATCCTGTGGAGGAGACCATCGC
AGCCCGCAGTCCACCGGGATCAGAGCTTCACTTACCAGTATAAGATACAGGACAAAAGCGTGTCCTTTTT
TGCCAAAGGAATGTCTCCTGCTGTTCTGTGA

Translation (266 aa):
MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQKLGV
SLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPV
LLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRA
EGLATGFCRDVHGQLRILWRRPSQPAVHRDQSFTYQYKIQDKSVSFFAKGMSPAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH