NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25936.1 Public Mus musculus 12 Lrfn5 23 108 98 CCDS HistoryNCBI Gene:238205Re-query CCDS DB by CCDS ID:25936.1Re-query CCDS DB by GeneID:238205See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055815.13 ENSMUSP00000051546.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055815.13Link to Ensembl Protein Viewer:ENSMUSP00000051546.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055815Re-query CCDS DB by Protein ID:ENSMUSP00000051546
Original member Current member NCBI NM_178714.5 NP_848829.2 Accepted alive Link to Nucleotide Sequence:NM_178714.5Link to Protein Sequence:NP_848829.2Re-query CCDS DB by Nucleotide ID:NM_178714Re-query CCDS DB by Protein ID:NP_848829Link to BLAST:NP_848829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848829.2 746 Q8BXA0-2 746 100% 0 0

Chromosomal Locations for CCDS 25936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 61839428 61840812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 61843312 61844167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGAAAAATTCCTTTTTTACCTGTTTCTCATTGGCATAGCTGTGCGAGCTCAGATCTGTCCAAAGCGTT
GTGTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTATTTGTTCCACC
AAACATTGACAGAAGAACTGTGGAGCTACGGCTGGCAGACAATTTTGTTACAAATATCAAAAGGAAAGAT
TTTGCCAATATGACCAGCTTGGTGGACCTGACTCTATCCAGGAATACAATAAGTTTTATTACACCCCATG
CTTTTGCTGATCTACGAAATTTGAGAGCACTGCATTTGAATAGCAACAGATTGACTAAAATTACAAATGA
TATGTTCAGTGGGCTTTCCAATCTCCACCATTTGATATTGAACAACAATCAGCTGACTTTAATTTCTTCC
ACAGCCTTCGATGATGTTTTTGCCCTTGAGGAGCTGGACCTGTCCTATAATAATCTAGAAACGATTCCCT
GGGATGCTGTAGAGAAGATGGTGAGCTTGCACACCCTTAGTTTGGATCACAATATGATTGACAACATTCC
TAAGGGTACTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACTGCAAAAGCTG
CCTCCTGACCCTCTGTTTCAGCGAGCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCATCGACTTTTG
CATTGAGTTTTGGTGGAAACCCCTTGCATTGCAATTGTGAGTTGCTGTGGCTGAGGCGATTGTCTCGAGA
AGATGACCTTGAGACGTGTGCTTCTCCTGCACTTTTAACTGGTCGTTATTTTTGGTCAATTCCTGAGGAA
GAGTTTTTGTGTGAGCCTCCGCTCATCACTCGTCATACACATGAGATGAGAGTCTTGGAGGGTCAAAGGG
CAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCGATTCATTGGATTTCCCCTGAAGGGAAGCT
GATTTCAAATGCAACACGATCTCTGGTGTATGATAACGGGACACTTGACATCCTTATAACAACTGTAAAA
GATACAGGAGCTTTTACCTGTATTGCTTCCAATCCGGCAGGGGAAGCAACACAAACCGTGGATCTTCACA
TAATTAAACTCCCTCACCTACTAAACAGCACCAATCATATCCATGAGCCTGATCCTGGTTCTTCTGATAT
CTCCACATCCACTAAGTCAGGCTCGAATGCTAGCAGTAGTAATGGTGATACAAAAATGAGTCAAGATAAA
ATCGTGGTGGCAGAAGCAACTTCGTCAACAGCATTACTAAAATTTAATTTTCAAAGAAATATTCCCGGAA
TCCGTATGTTTCAAATCCAGTACAATGGTACTTATGATGACACCCTTGTTTACAGAATGATACCTCCTAC
GAGCAAAACATTTCTGGTCAATAATCTGGCATCTGGAACTATGTATGACTTGTGTGTCTTGGCCATCTAT
GACGATGGCATCACTTCCCTCACTGCCACAAGAGTCGTGGGTTGCATCCAGTTTACTACGGAACAGGATT
ATGTCCGTTGCCACTTTATGCAGTCCCAGTTCTTGGGTGGCACCATGATTATTATCATTGGTGGAATCAT
TGTTGCATCCGTGTTGGTTTTCATCATCATACTAATGATCCGGTATAAGGTTTGTAACAATAATGGGCAA
CACAAGGTCACGAAGGTTAGCAACGTTTATTCTCAGACTAATGGGGCTCAGATGCAAGGCTGCAGTGTCA
CGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCAGTGCTGTAAAGTTGCCAG
TGACAATGCAATTCAGTCTTCAGAAACATGTTCGAGTCAGGACTCTTCTACCACTACCTCTGCTTTGCCT
CCTACCTGGACTTCAAGTGCGCCTGTGTCTCAAAAGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTG
AGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCA
GTTAGCTAGCTGCCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGT
AAGTTTCTCACTGTGCCTGCTGAGGGATCTAGAGCCAGGCACAGGGCCTCCCTCAGTGGAGGTTTAAAGG
ACTCTTTTCACTATGGTAATTCCCAGCTGTCTCTTAAGAGAAGCATGTCTATGAATGCAATGTGGACTTA
G

Translation (746 aa):
MEKFLFYLFLIGIAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKD
FANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISS
TAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKL
PPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEE
EFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVK
DTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDTKMSQDK
IVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLASGTMYDLCVLAIY
DDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQ
HKVTKVSNVYSQTNGAQMQGCSVTLPQSMSKQAMGHEENAQCCKVASDNAIQSSETCSSQDSSTTTSALP
PTWTSSAPVSQKQKRKTGTKPSAEPQSEAVTNVESQNTNRNNSTALQLASCPPDSVTEGPTSQRAHTKPS
KFLTVPAEGSRARHRASLSGGLKDSFHYGNSQLSLKRSMSMNAMWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH