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Report for CCDS20380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20380.1 Public Mus musculus 6 Lrig1 23 108 98 CCDS HistoryNCBI Gene:16206Re-query CCDS DB by CCDS ID:20380.1Re-query CCDS DB by GeneID:16206See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032105.10 ENSMUSP00000032105.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032105.10Link to Ensembl Protein Viewer:ENSMUSP00000032105.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032105Re-query CCDS DB by Protein ID:ENSMUSP00000032105
Original member Current member EBI ENSMUST00000101126.2 ENSMUSP00000098686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101126.2Link to Ensembl Protein Viewer:ENSMUSP00000098686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101126Re-query CCDS DB by Protein ID:ENSMUSP00000098686
Original member Current member EBI ENSMUST00000204645.2 ENSMUSP00000144963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204645.2Link to Ensembl Protein Viewer:ENSMUSP00000144963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204645Re-query CCDS DB by Protein ID:ENSMUSP00000144963
Original member NCBI NM_008377.2 NP_032403.2 Updated not alive Link to Nucleotide Sequence:NM_008377.2Link to Protein Sequence:NP_032403.2Re-query CCDS DB by Nucleotide ID:NM_008377Re-query CCDS DB by Protein ID:NP_032403
Current member NCBI NM_008377.3 NP_032403.2 Accepted alive Link to Nucleotide Sequence:NM_008377.3Link to Protein Sequence:NP_032403.2Re-query CCDS DB by Nucleotide ID:NM_008377Re-query CCDS DB by Protein ID:NP_032403Link to BLAST:NP_032403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032403.2 1091 P70193 1091 100% 0 0

Chromosomal Locations for CCDS 20380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 94605759 94606003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94606103 94606363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94607292 94607438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94608040 94608165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94608709 94609128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94609617 94609898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94611372 94611692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94613564 94613727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94616389 94616460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94617246 94617317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94620253 94620333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94622615 94622758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94624930 94625073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94626369 94626512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94627960 94628103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94630102 94630239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94654847 94654921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94663927 94663998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94699462 94699685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGGCGCGGCCCGGTCCGGGAGTGCTCGGAGCCCCGCGCCTTGCGCCTCGCCTTCTGCTCTGGCTGCTCT
TGCTGCTACTGCAATGGCCGGAGTCAGCGGGCGCCCAGGCTGGCCCGCGGGCCCCCTGCGCGGCCGCCTG
CACTTGCGCCGGGGACTCGCTGGACTGCAGTGGGCGCGGGCTGGCGACGCTGCCCCGGGACCTGCCCTCC
TGGACGCGCAGCCTAAACCTGAGTTATAACAGACTCTCCGAGATCGACTCTGCTGCTTTTGAGGACTTGA
CGAATCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGACAGCCATACCATCACTGGGCGCTGCTTCCAT
AGGAGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTAC
CTGTCCTTGGAAGTGCTGGATCTGAGTTCCAACAACATCACGGAAATTCGGAGCTCCTGTTTCCCGAACG
GCCTGCGTATAAGGGAACTCAACTTGGCGAGCAACCGCATCAGCATCCTGGAGTCTGGAGCATTTGATGG
TCTGTCGCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTC
AAGCTACCCAGGCTGACACAACTAGACCTGAATCGGAATCGGATTCGGCTGATTGAAGGCCTCACGTTCC
AGGGGCTCGACAGCTTAGAGGTGCTGAGGCTTCAGAGGAACAACATCAGCAGGCTGACGGACGGGGCCTT
CTGGGGGCTGTCTAAGATGCACGTGCTGCACCTGGAGTACAACAGTCTGGTGGAAGTGAACAGTGGCTCC
CTCTATGGCCTCACAGCCCTGCACCAGCTGCACCTCAGCAACAACTCCATCTCTCGAATTCAGCGTGATG
GCTGGAGCTTCTGCCAAAAGCTGCATGAGTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGATGAGGA
GAGTCTAGCGGAGTTGAGCAGCCTCAGTATCCTGCGCCTCAGTCACAACGCCATCAGTCACATTGCTGAA
GGCGCCTTCAAGGGACTCAAGAGTCTGCGGGTCTTGGACCTGGACCATAACGAGATCTCGGGTACAATCG
AGGATACCAGTGGTGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAA
ATCTGTGGCTAAGAGAGCCTTCTCGGGCCTGGAAAGCCTGGAACACCTGAACCTTGGAGAGAATGCAATC
AGGTCTGTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTTAAAGAGCTCTACATCAGCAGTGAGAGCT
TCCTGTGTGACTGCCAGCTCAAGTGGCTGCCCCCATGGCTAATGGGTAGGATGCTGCAGGCCTTTGTGAC
AGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGCTTTGTG
TGTGATGACTTTCCAAAGCCACAGATCATCACCCAGCCTGAGACGACCATGGCTGTGGTGGGCAAGGACA
TCCGTTTCACATGCTCCGCAGCCAGCAGCAGCAGCTCACCAATGACCTTCGCCTGGAAGAAGGACAATGA
GGTCCTGGCCAATGCAGACATGGAGAACTTTGCCCACGTCCGTGCACAGGACGGCGAAGTGATGGAGTAT
ACCACTATCCTGCACCTCCGTCACGTCACCTTTGGGCACGAGGGCCGCTACCAGTGTATCATCACAAACC
ACTTTGGCTCCACATACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATTCACTAAAATACC
CCATGACATTGCCATCCGGACTGGCACCACAGCCCGCCTCGAGTGTGCTGCCACGGGCCACCCTAACCCT
CAGATTGCCTGGCAGAAGGATGGAGGCACCGATTTCCCGGCAGCTCGTGAGCGACGCATGCATGTTATGC
CAGACGATGATGTGTTCTTCATCACTGATGTGAAAATAGACGACATGGGGGTCTACAGCTGCACTGCCCA
GAACTCGGCAGGCTCGGTTTCAGCCAACGCTACCCTCACAGTCTTAGAAACTCCATCCTTGGCAGTGCCT
CTGGAAGACCGTGTGGTAACTGTGGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACAC
CACGCATCACCTGGCTTAAGGGAGGTCGCCCATTGAGCCTCACAGAGCGCCACCATTTCACTCCAGGCAA
CCAGCTGCTGGTTGTTCAGAATGTGATGATAGACGATGCAGGGCGGTATACCTGTGAGATGTCTAATCCC
CTGGGCACTGAGCGAGCACATAGCCAGCTGAGCATTTTACCTACCCCTGGCTGCCGGAAGGATGGGACCA
CCGTAGGCATCTTCACCATTGCTGTGGTGTGCAGTATTGTCCTGACCTCGCTGGTGTGGGTGTGCATCAT
CTACCAGACCAGGAAGAAGAGCGAGGAGTACAGCGTCACTAACACAGATGAAACCATTGTGCCTCCAGAT
GTTCCAAGCTACCTCTCCTCTCAGGGAACCCTTTCTGACCGGCAGGAAACTGTGGTCAGGACTGAGGGTG
GTCATCAGGCCAATGGGCACATTGAAAGCAATGGTGTGTGTCTGAGAGACCCGAGCCTCTTCCCAGAGGT
CGACATTCATAGCACTACATGCAGGCAGCCCAAGCTGTGTGTTGGATACACTAGAGAGCCCTGGAAGGTG
ACGGAGAAAGCCGACAGGACAGCTGCCCCACATACAACAGCACACAGTGGCTCTGCTGTATGTAGTGACT
GCAGTACTGACACAGCCTACCATCCCCAGCCTGTGCCCAGAGACAGTGGGCAGCCAGGCACAGCGAGCAG
CCAAGAGCTCAGGCAGCATGACCGGGAATATTCTCCACACCATCCTTACAGTGGGACTGCGGATGGGTCT
CATACCCTCTCTGGGGGGTCCCTCTATCCAAGCAACCATGACAGAATACTGCCATCCTTGAAGAACAAGG
CGGCGTCTGCAGATGGGAACGGAGATTCCTCTTGGACTTTAGCAAAGTTACATGAAGCAGACTGCATAGA
CCTAAAGCCTTCTCCTACGTTAGCTTCAGGCAGCCCAGAGCTCATGGAAGACGCCATATCTACTGAAGCC
CAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCAGCCCTGAATCTGTGCCACTGA
AAGGGCAGATCACTGGGAAACGGAGGGGACCACTGCTATTGGCACCGAGAAGCTAG

Translation (1091 aa):
MARPGPGVLGAPRLAPRLLLWLLLLLLQWPESAGAQAGPRAPCAAACTCAGDSLDCSGRGLATLPRDLPS
WTRSLNLSYNRLSEIDSAAFEDLTNLQEVYLNSNELTAIPSLGAASIGVVSLFLQHNKILSVDGSQLKSY
LSLEVLDLSSNNITEIRSSCFPNGLRIRELNLASNRISILESGAFDGLSRSLLTLRLSKNRITQLPVKAF
KLPRLTQLDLNRNRIRLIEGLTFQGLDSLEVLRLQRNNISRLTDGAFWGLSKMHVLHLEYNSLVEVNSGS
LYGLTALHQLHLSNNSISRIQRDGWSFCQKLHELILSFNNLTRLDEESLAELSSLSILRLSHNAISHIAE
GAFKGLKSLRVLDLDHNEISGTIEDTSGAFTGLDNLSKLTLFGNKIKSVAKRAFSGLESLEHLNLGENAI
RSVQFDAFAKMKNLKELYISSESFLCDCQLKWLPPWLMGRMLQAFVTATCAHPESLKGQSIFSVLPDSFV
CDDFPKPQIITQPETTMAVVGKDIRFTCSAASSSSSPMTFAWKKDNEVLANADMENFAHVRAQDGEVMEY
TTILHLRHVTFGHEGRYQCIITNHFGSTYSHKARLTVNVLPSFTKIPHDIAIRTGTTARLECAATGHPNP
QIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDMGVYSCTAQNSAGSVSANATLTVLETPSLAVP
LEDRVVTVGETVAFQCKATGSPTPRITWLKGGRPLSLTERHHFTPGNQLLVVQNVMIDDAGRYTCEMSNP
LGTERAHSQLSILPTPGCRKDGTTVGIFTIAVVCSIVLTSLVWVCIIYQTRKKSEEYSVTNTDETIVPPD
VPSYLSSQGTLSDRQETVVRTEGGHQANGHIESNGVCLRDPSLFPEVDIHSTTCRQPKLCVGYTREPWKV
TEKADRTAAPHTTAHSGSAVCSDCSTDTAYHPQPVPRDSGQPGTASSQELRQHDREYSPHHPYSGTADGS
HTLSGGSLYPSNHDRILPSLKNKAASADGNGDSSWTLAKLHEADCIDLKPSPTLASGSPELMEDAISTEA
QHLLVSNGHLPKACDSSPESVPLKGQITGKRRGPLLLAPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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