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Report for CCDS32830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32830.1 Public Homo sapiens 18 ZBTB7C 24 110 108 CCDS HistoryNCBI Gene:201501Re-query CCDS DB by CCDS ID:32830.1Re-query CCDS DB by GeneID:201501See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 32830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535628.6 ENSP00000439781.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535628.6Link to Ensembl Protein Viewer:ENSP00000439781.1Re-query CCDS DB by Nucleotide ID:ENST00000535628Re-query CCDS DB by Protein ID:ENSP00000439781
Original member Current member EBI ENST00000590800.6 ENSP00000467877.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000590800.6Link to Ensembl Protein Viewer:ENSP00000467877.1Re-query CCDS DB by Nucleotide ID:ENST00000590800Re-query CCDS DB by Protein ID:ENSP00000467877
Original member Current member EBI ENST00000586438.5 ENSP00000468254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586438.5Link to Ensembl Protein Viewer:ENSP00000468254.1Re-query CCDS DB by Nucleotide ID:ENST00000586438Re-query CCDS DB by Protein ID:ENSP00000468254
Original member Current member EBI ENST00000588982.5 ENSP00000468782.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588982.5Link to Ensembl Protein Viewer:ENSP00000468782.1Re-query CCDS DB by Nucleotide ID:ENST00000588982Re-query CCDS DB by Protein ID:ENSP00000468782
Original member Current member NCBI NM_001039360.3 NP_001034449.1 Accepted alive Link to Nucleotide Sequence:NM_001039360.3Link to Protein Sequence:NP_001034449.1Re-query CCDS DB by Nucleotide ID:NM_001039360Re-query CCDS DB by Protein ID:NP_001034449Link to BLAST:NP_001034449.1
Original member Current member NCBI NM_001318841.2 NP_001305770.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318841.2Link to Protein Sequence:NP_001305770.1Re-query CCDS DB by Nucleotide ID:NM_001318841Re-query CCDS DB by Protein ID:NP_001305770Link to BLAST:NP_001305770.1
Original member Current member NCBI NM_001371284.1 NP_001358213.1 Accepted alive Link to Nucleotide Sequence:NM_001371284.1Link to Protein Sequence:NP_001358213.1Re-query CCDS DB by Nucleotide ID:NM_001371284Re-query CCDS DB by Protein ID:NP_001358213Link to BLAST:NP_001358213.1
Original member Current member NCBI NM_001371285.1 NP_001358214.1 Accepted alive Link to Nucleotide Sequence:NM_001371285.1Link to Protein Sequence:NP_001358214.1Re-query CCDS DB by Nucleotide ID:NM_001371285Re-query CCDS DB by Protein ID:NP_001358214Link to BLAST:NP_001358214.1
Original member Current member NCBI NM_001371286.1 NP_001358215.1 Accepted alive Link to Nucleotide Sequence:NM_001371286.1Link to Protein Sequence:NP_001358215.1Re-query CCDS DB by Nucleotide ID:NM_001371286Re-query CCDS DB by Protein ID:NP_001358215Link to BLAST:NP_001358215.1
Original member Current member NCBI NM_001371287.1 NP_001358216.1 Accepted alive Link to Nucleotide Sequence:NM_001371287.1Link to Protein Sequence:NP_001358216.1Re-query CCDS DB by Nucleotide ID:NM_001371287Re-query CCDS DB by Protein ID:NP_001358216Link to BLAST:NP_001358216.1
Original member Current member NCBI NM_001371288.1 NP_001358217.1 Accepted alive Link to Nucleotide Sequence:NM_001371288.1Link to Protein Sequence:NP_001358217.1Re-query CCDS DB by Nucleotide ID:NM_001371288Re-query CCDS DB by Protein ID:NP_001358217Link to BLAST:NP_001358217.1
Original member Current member NCBI NM_001371290.1 NP_001358219.1 Accepted alive Link to Nucleotide Sequence:NM_001371290.1Link to Protein Sequence:NP_001358219.1Re-query CCDS DB by Nucleotide ID:NM_001371290Re-query CCDS DB by Protein ID:NP_001358219Link to BLAST:NP_001358219.1
Original member Current member NCBI NM_001371291.1 NP_001358220.1 Accepted alive Link to Nucleotide Sequence:NM_001371291.1Link to Protein Sequence:NP_001358220.1Re-query CCDS DB by Nucleotide ID:NM_001371291Re-query CCDS DB by Protein ID:NP_001358220Link to BLAST:NP_001358220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034449.1 619 A1YPR0 619 100% 0 0
NP_001305770.1 619 A1YPR0 619 100% 0 0
NP_001358213.1 619 A1YPR0 619 100% 0 0
NP_001358214.1 619 A1YPR0 619 100% 0 0
NP_001358215.1 619 A1YPR0 619 100% 0 0
NP_001358216.1 619 A1YPR0 619 100% 0 0
NP_001358217.1 619 A1YPR0 619 100% 0 0
NP_001358219.1 619 A1YPR0 619 100% 0 0
NP_001358220.1 619 A1YPR0 619 100% 0 0

Chromosomal Locations for CCDS 32830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 48029260 48029911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 48039900 48041107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGCCAATGACATTGATGAGCTCATTGGCATTCCCTTCCCCAACCACAGCAGTGAGGTCCTGTGCAGCC
TCAATGAGCAACGGCACGATGGCCTGCTGTGTGACGTGCTCCTGGTGGTGCAGGAGCAGGAGTATCGGAC
CCACCGCTCCGTCCTGGCTGCCTGCAGCAAGTACTTCAAGAAGCTTTTCACAGCCGGCACCCTAGCCAGC
CAGCCCTACGTCTATGAGATCGACTTTGTCCAGCCTGAGGCTCTGGCTGCTATCCTGGAGTTCGCCTACA
CCTCCACGCTCACCATCACCGCTGGCAATGTCAAGCACATCCTCAACGCAGCCAGGATGCTGGAGATCCA
GTGCATCGTGAACGTGTGCCTGGAGATCATGGAGCCTGGGGGGGACGGGGGGGAGGAGGATGACAAGGAG
GACGATGACGACGACGAAGATGATGATGATGAGGAGGACGAAGAGGAGGAGGAGGAAGAGGAGGAGGATG
ACGATGATGACACGGAGGACTTTGCTGACCAAGAAAACTTGCCTGACCCCCAGGACATCAGCTGCCACCA
AAGCCCTTCCAAGACAGACCATCTCACAGAGAAGGCCTATTCAGACACCCCCAGGGACTTCCCTGACTCC
TTCCAGGCTGGCAGTCCTGGCCATCTGGGGGTGATCCGGGACTTCTCCATCGAATCTCTGCTAAGGGAGA
ACCTGTACCCCAAGGCCAACATCCCCGACAGGAGACCCTCCTTGTCTCCATTCGCCCCGGACTTCTTTCC
ACACCTCTGGCCAGGGGACTTCGGTGCCTTTGCCCAGCTGCCTGAGCAGCCCATGGACAGTGGGCCACTG
GATCTGGTCATCAAGAATCGGAAGATCAAGGAGGAGGAGAAGGAGGAGCTGCCCCCACCCCCACCGCCAC
CCTTCCCTAATGACTTCTTCAAGGACATGTTCCCTGACCTGCCGGGGGGGCCTCTGGGACCCATCAAGGC
GGAGAACGACTACGGTGCCTATCTCAACTTCCTGAGTGCCACCCACCTGGGAGGCCTCTTCCCACCCTGG
CCCCTGGTAGAAGAGCGCAAGCTGAAGCCCAAGGCCTCTCAGCAGTGCCCCATCTGCCACAAAGTCATCA
TGGGGGCCGGGAAGCTGCCGCGGCACATGAGGACCCATACCGGGGAGAAGCCATACATGTGCACCATCTG
CGAGGTCCGCTTCACCAGGCAGGACAAGCTGAAAATCCACATGCGGAAGCACACAGGGGAGCGGCCCTAC
CTGTGCATCCACTGCAACGCCAAGTTCGTGCACAACTACGACCTCAAGAACCACATGCGCATCCACACGG
GCGTGCGGCCCTACCAGTGCGAGTTCTGCTACAAGAGCTTCACGCGCTCTGACCACCTGCACCGCCACAT
CAAGCGCCAGAGCTGCCGCATGGCACGGCCCCGACGCGGCCGCAAGCCTGCTGCGTGGAGGGCCGCCAGC
CTGCTCTTCGGGCCCGGCGGCCCGGCCCCCGACAAGGCGGCCTTCGTGATGCCCCCTGCGCTGGGCGAGG
TGGGCGGCCACCTGGGCGGCGCAGCTGTGTGCCTCCCGGGCCCCAGCCCCGCCAAGCACTTCCTGGCAGC
GCCCAAGGGCGCCCTGAGCCTGCAAGAGCTGGAGCGGCAGTTCGAGGAGACACAGATGAAGCTGTTCGGG
CGCGCGCAGCTGGAGGCTGAGAGGAACGCGGGGGGCCTCCTGGCCTTCGCGCTGGCCGAGAACGTGGCGG
CGGCGCGGCCCTACTTCCCGCTGCCCGACCCTTGGGCCGCCGGCCTGGCCGGCCTCCCTGGGCTCGCCGG
CCTCAACCACGTGGCCTCCATGTCCGAAGCCAACAACTAG

Translation (619 aa):
MANDIDELIGIPFPNHSSEVLCSLNEQRHDGLLCDVLLVVQEQEYRTHRSVLAACSKYFKKLFTAGTLAS
QPYVYEIDFVQPEALAAILEFAYTSTLTITAGNVKHILNAARMLEIQCIVNVCLEIMEPGGDGGEEDDKE
DDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDPQDISCHQSPSKTDHLTEKAYSDTPRDFPDS
FQAGSPGHLGVIRDFSIESLLRENLYPKANIPDRRPSLSPFAPDFFPHLWPGDFGAFAQLPEQPMDSGPL
DLVIKNRKIKEEEKEELPPPPPPPFPNDFFKDMFPDLPGGPLGPIKAENDYGAYLNFLSATHLGGLFPPW
PLVEERKLKPKASQQCPICHKVIMGAGKLPRHMRTHTGEKPYMCTICEVRFTRQDKLKIHMRKHTGERPY
LCIHCNAKFVHNYDLKNHMRIHTGVRPYQCEFCYKSFTRSDHLHRHIKRQSCRMARPRRGRKPAAWRAAS
LLFGPGGPAPDKAAFVMPPALGEVGGHLGGAAVCLPGPSPAKHFLAAPKGALSLQELERQFEETQMKLFG
RAQLEAERNAGGLLAFALAENVAAARPYFPLPDPWAAGLAGLPGLAGLNHVASMSEANN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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