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Report for CCDS20705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20705.1 Public Mus musculus 6 Mansc4 23 108 98 CCDS HistoryNCBI Gene:545893Re-query CCDS DB by CCDS ID:20705.1Re-query CCDS DB by GeneID:545893See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100780.2 ENSMUSP00000098343.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100780.2Link to Ensembl Protein Viewer:ENSMUSP00000098343.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100780Re-query CCDS DB by Protein ID:ENSMUSP00000098343
Original member Current member NCBI NM_001034903.3 NP_001030075.1 Accepted alive Link to Nucleotide Sequence:NM_001034903.3Link to Protein Sequence:NP_001030075.1Re-query CCDS DB by Nucleotide ID:NM_001034903Re-query CCDS DB by Protein ID:NP_001030075Link to BLAST:NP_001030075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030075.1 337 Q3UU94 337 100% 0 0

Chromosomal Locations for CCDS 20705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147075103 147075764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147081586 147081720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147086748 147086964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGCGGGCTGTGGAGCTGCTACTGCTGCTGGGGCTGGCTAGCATGGTGCATGGGCTCTGCTCACCCACTG
TGTTCTACAGAGATTGCTGGATCCGCCGCTTCCCGGGGATGCTCTTGGACCTGGAGGAGTCTCAGAGGCT
GGGCGCCCAGTTCCTCAAGTACTACTCGGAGAACACCGGGCAGAAGTGCGGCCGCAGCTGCTGCCTCCGG
AAGGATGTTTCCTGTAATGTGGCTGTCTTCTTCCACGATCCCGTCCACGACAATGTCAACTGCCTTCATG
TTCACTGCCCAACCCTGGAGAGCTGCATCCTGGAGCCCGGGGCCAGCGCCATACTGTATAACATAACAGC
AGGCATAGACCCAGACTTGCTGGTTTTTGAGCATACATCTCCCATCTACCCAAACAGCCGCTCCTCGTCC
GAATGGTGGGATAGACTGCGGATTCTAAAAGCTATGAGTGTAGGGAGTGAAGGAGTATACCCAGATGTGA
TGAACCGCATGGTGCCATCCACAGAGGCAGCGTCAACCACACAGCAGGATTTAGGTGCAAACACGGGTAT
CAGTTATTCCAGGAAGTCAACCACGGATGTGGGGTTAAGATTCACATCTGCAAACGTGTCCACTGCTACC
AAGGTCAACATGGTATCACCAAGCACAGACTTCACCCACAGTCCAGGCAACAAGACTATTTCTCCTTTCT
TTGGACCCACAGACACAAGAGTTTCCCAGGTGCCCAGCCGATCTCGACTCAACATTAGCAAACCATCAGT
GAACAAAACAAAGGGGTCCCACAGCAGAAACCACTCATCTGAGAACGAAGAGCCATGGGATGGAGCGCCA
GCGTCTGCAGGGGTCTGGCTGGCTTGTGTGACCCTGGGTGCTGCCGTCATCAGCCTTTGCTGCCGTGTGG
TCCTCGGGACATCCAGATGCTGTGGGAAGCGGCAGGGCTGGTCTCACATGGGGCAAAGGTCAGCATCTGG
GTGCAGGCGTAACACACTGAAGGAAAACTCCTAA

Translation (337 aa):
MRAVELLLLLGLASMVHGLCSPTVFYRDCWIRRFPGMLLDLEESQRLGAQFLKYYSENTGQKCGRSCCLR
KDVSCNVAVFFHDPVHDNVNCLHVHCPTLESCILEPGASAILYNITAGIDPDLLVFEHTSPIYPNSRSSS
EWWDRLRILKAMSVGSEGVYPDVMNRMVPSTEAASTTQQDLGANTGISYSRKSTTDVGLRFTSANVSTAT
KVNMVSPSTDFTHSPGNKTISPFFGPTDTRVSQVPSRSRLNISKPSVNKTKGSHSRNHSSENEEPWDGAP
ASAGVWLACVTLGAAVISLCCRVVLGTSRCCGKRQGWSHMGQRSASGCRRNTLKENS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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