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Report for CCDS42951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42951.1 Public Homo sapiens 21 RRP1 24 110 108 CCDS HistoryNCBI Gene:8568Re-query CCDS DB by CCDS ID:42951.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42951.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000497547.2 ENSP00000417464.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000497547.2Link to Ensembl Protein Viewer:ENSP00000417464.1Re-query CCDS DB by Nucleotide ID:ENST00000497547Re-query CCDS DB by Protein ID:ENSP00000417464
Original member Current member NCBI NM_003683.6 NP_003674.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003683.6Link to Protein Sequence:NP_003674.1Re-query CCDS DB by Nucleotide ID:NM_003683Re-query CCDS DB by Protein ID:NP_003674Link to BLAST:NP_003674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003674.1 461 P56182 461 100% 0 0

Chromosomal Locations for CCDS 42951.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43789630 43789762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43791350 43791432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43792672 43792729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43793319 43793404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43795189 43795250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43797422 43797551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43797631 43797695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43797907 43798100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43799570 43799649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43800517 43800614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43800862 43800881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43802274 43802387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43803512 43803774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGTTTCGCGCGTGCAGCTCCCGCCTGAGATCCAGCTGGCTCAGCGCCTGGCGGGGAATGAGCAGGTGA
CCCGGGACCGGGCGGTGAGGAAGCTCCGGAAATACATCGTCGCCAGGACTCAGCGGGCCGCAGGTGGTTT
TACGCACGACGAGCTGCTGAAGGTGTGGAAAGGACTGTTTTATTGCATGTGGATGCAGGACAAGCCACTC
CTCCAGGAAGAATTAGGAAGGACTATTTCCCAGCTCGTTCATGCTTTTCAGACCACGGAGGCGCAGCACC
TGTTCCTTCAGGCCTTCTGGCAGACCATGAATCGCGAGTGGACGGGCATTGACAGGCTGCGCCTGGATAA
ATTCTACATGCTCATGCGGATGGTCCTGAACGAGTCCTTGAAGGTTCTGAAGATGCAAGGCTGGGAAGAA
AGACAGATCGAGGAGCTGCTAGAGCTGCTGATGACTGAGATCCTGCACCCCAGCAGCCAGGCCCCCAACG
GTGTGAAGAGCCACTTCATCGAGATCTTCCTGGAGGAGCTGACCAAAGTGGGCGCCGAGGAGCTTACGGC
AGACCAGAACCTGAAGTTCATCGACCCCTTCTGCAGAATTGCTGCCCGGACCAAGGATTCCTTGGTTTTG
AACAACATCACTCGAGGCATCTTTGAGACGATTGTGGAGCAGGCCCCGCTTGCCATTGAAGACCTCCTGA
ATGAACTGGACACACAGGATGAGGAGGTGGCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG
AGACGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGCTCCATCTGCAGGGCTGAACCTGAGGCT
GGTGAGGAGCAGGCAGGTGACGACAGGGACAGTGGCGGCCCCGTTCTCCAGTTTGACTACGAGGCAGTTG
CTAACAGACTGTTTGAAATGGCCAGCCGCCAGAGCACCCCTTCTCAGAACAGAAAGCGTCTCTACAAAGT
GATCCGGAAGCTGCAGGACCTGGCAGGAGGCATTTTCCCTGAAGATGAGATCCCAGAGAAGGCCTGCAGG
CGCCTGCTTGAAGGGAGGCGGCAGAAGAAGACGAAGAAGCAGAAGCGTCTGCTCAGGTTGCAGCAGGAGA
GAGGGAAAGGTGAGAAGGAGCCCCCGAGCCCGGGCATGGAGAGGAAGAGGAGCAGGAGGAGGGGTGTAGG
GGCCGACCCCGAGGCGCGGGCAGAGGCTGGTGAGCAGCCAGGCACAGCTGAGCGGGCCCTGCTCCGAGAT
CAGCCCAGGGGCCGTGGCCAGAGAGGGGCTCGCCAGAGAAGGAGGACACCTCGGCCCCTGACCAGTGCCC
GAGCAAAGGCGGCCAATGTCCAGGAGCCGGAGAAGAAGAAGAAACGCAGGGAGTGA

Translation (461 aa):
MVSRVQLPPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPL
LQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESLKVLKMQGWEE
RQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKVGAEELTADQNLKFIDPFCRIAARTKDSLVL
NNITRGIFETIVEQAPLAIEDLLNELDTQDEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRAEPEA
GEEQAGDDRDSGGPVLQFDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDLAGGIFPEDEIPEKACR
RLLEGRRQKKTKKQKRLLRLQQERGKGEKEPPSPGMERKRSRRRGVGADPEARAEAGEQPGTAERALLRD
QPRGRGQRGARQRRRTPRPLTSARAKAANVQEPEKKKKRRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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