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Report for CCDS34081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34081.1 Public Homo sapiens 4 FHDC1 24 110 108 CCDS HistoryNCBI Gene:85462Re-query CCDS DB by CCDS ID:34081.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511601.6 ENSP00000427567.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511601.6Link to Ensembl Protein Viewer:ENSP00000427567.1Re-query CCDS DB by Nucleotide ID:ENST00000511601Re-query CCDS DB by Protein ID:ENSP00000427567
Original member Current member NCBI NM_001371116.1 NP_001358045.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371116.1Link to Protein Sequence:NP_001358045.1Re-query CCDS DB by Nucleotide ID:NM_001371116Re-query CCDS DB by Protein ID:NP_001358045Link to BLAST:NP_001358045.1
Original member Current member NCBI NM_033393.3 NP_203751.2 Accepted alive Link to Nucleotide Sequence:NM_033393.3Link to Protein Sequence:NP_203751.2Re-query CCDS DB by Nucleotide ID:NM_033393Re-query CCDS DB by Protein ID:NP_203751Link to BLAST:NP_203751.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358045.1 1143 Q9C0D6 1143 100% 0 0
NP_203751.2 1143 Q9C0D6 1143 100% 0 0

Chromosomal Locations for CCDS 34081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152943058 152943555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152953499 152953560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152954217 152954319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152960565 152960650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152960744 152960844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152962814 152962884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152963023 152963130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152964905 152964975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152967980 152968097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152972377 152972541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152974675 152976723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3432 nt):
ATGCATGTTATGAATTGTGTCTCCTTGGTCAGTGATAAAGAAAATGGGAATATTGCCACAGCACCTGGAT
TCATGATTGGGCAGACACCTCCTCCAGCACCTCCTCCACCTCCTCCTCCACCCCCTCCATCTCCACCATG
TTCATGTTCAAGGGAAGAGTGTCCTTCCTCCCCTCCTCCACCCCCACCACCTCCACTTCCTGGGGAGCCT
CCCATCCCACCTCCCCCACCAGGCCTACCCCCAACTACTCACATGAACGGCTACAGCCACCTTGGTAAGA
AAAAGCGGATGAGAAGCTTTTTTTGGAAAACTATTCCGGAGGAGCAAGTTCGAGGCAAAACCAACATCTG
GACCTTGGCAGCCAGGCAGGAACATCACTACCAAATTGATACAAAGACCATTGAGGAGCTCTTTGGGCAG
CAGGAAGACACCACCAAGTCTTCCCTTCCTAGGAGAGGAAGAACTTTAAATTCATCCTTCAGAGAAGCTC
GAGAAGAGATTACTATTTTGGATGCAAAACGGAGCATGAACATTGGGATATTTCTTAAGCAATTTAAGAA
GTCTCCTCGGTCCATTGTAGAAGATATTCATCAAGGAAAAAGTGAGCATTATGGATCAGAGACCTTGCGA
GAATTTCTTAAGTTTTTGCCAGAGTCAGAAGAGGTAAAGAAGTTAAAAGCGTTTAGTGGCGACGTGTCGA
AGCTGTCTCTGGCAGATTCCTTTCTGTATGGCTTAATTCAGGTGCCAAACTATTCACTTCGGATTGAAGC
CATGGTGCTAAAGAAGGAATTTCTACCTTCTTGCTCTTCTCTATATACAGATATAACAGTTTTAAGAACT
GCTATAAAAGAACTGATGTCATGTGAAGAGCTACATTCAATATTACACTTGGTGCTCCAGGCTGGGAATA
TCATGAATGCAGGAGGGTATGCCGGCAATGCAGTAGGATTTAAACTGTCTTCTTTGCTCAAATTGGCAGA
CACAAAAGCAAACAAACCTGGGATGAATCTCCTGCACTTTGTTGCACAGGAAGCCCAAAAGAAAGATACC
ATTCTTCTAAACTTTTCAGAAAAATTGCATCATGTTCAGAAGACTGCTAGATTATCTCTGGAGAACACGG
AGGCAGAACTGCACTTGCTGTTTGTCAGGACAAAATCACTAAAAGAAAACATCCAGCGGGATGGTGAACT
TTGTCAGCAGATGGAAGATTTTCTTCAGTTTGCCATAGAAAAGCTGAGGGAACTGGAATGCTGGAAACAA
GAGCTCCAGGATGAGGCCTACACCCTTATAGATTTTTTCTGTGAAGACAAAAAAACCATGAAACTGGATG
AATGCTTTCAGATATTTAGAGATTTCTGTACCAAATTCAACAAAGCAGTTAAGGACAACCACGACCGGGA
GGCGCAGGAGCTGAGGCAGCTGCAGAGGCTGAAGGAGCAGGAGCAGAAGCAGCGCTCCTGGGCAACTGGG
GAGCTGGGGGCATTTGGCCGGAGCAGCAGTGAGAATGATGTGGAGCTGCTGACCAAGAAGGGTGCAGAGG
GCCTGCTCCCTTTCCTGCACCCCAGGCCCATCAGCCCCTCCAGCCCCTCCTACCGGCCCCCGAACACCCG
CCGCTCCCGCCTCTCCCTGGGTCCCTCTGCTGACCGGGAGCTGCTGACCTTCTTGGAGAGCTCCACCGGC
AGCCCTGAGGAGCCCAATAAGTTCCACAGCCTGCCCCGGAGCAGCCCCCGGCAGGCCCGGCCCACGATAG
CCTGCCTGGAGCCTGCAGAAGTGAGGCACCAGGACTCCAGCTTTGCACACAAACCTCAGGCCTCGGGGGG
CCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGCGCACCAGCTTGCAGCCGCCCAGCCTGAGAACCAT
GCCTCTGCCTTCCCCAGAGCTCGGCGCCAGGGCGTCAGTGTCCTCCGAAAGAGGTACAGTGAGCCGGTGA
GCCTGGGCTCAGCACAGTCCCCTCCTCTCTCGCCATTGGCTCTGGGAATTAAGGAGCATGAGCTGGTGAC
AGGGCTGGCCCAGTTCAACCTCCAGGGTTCCCAGGGCATGGAGGAGACCTCCCAGCTGACTCTGAGTGAC
TTCAGCCCGATGGAGCTAGAGTCTGTGGGGCATAGGGGCCCGCAGTCCCTCAGTGCCAGCAGCAGCAGCC
TGACACCCATGGGCAGAGATGCCCTGGGGAGTCTCAGCCCAGCGCTGGAGGATGGCAAGGCTGCCCCCGA
TGAGCCTGGAAGTGCAGCTTTGGGATCTGTGGGTAGCAGCGACCCTGAGAACAAAGATCCTAGACCTCTG
TTCTGCATCTCGGACACCACCGACTGCTCACTGACCCTGGACTGCTCAGAGGGAACCGACTCCAGACCCA
GAGGCGGGGACCCGGAGGAAGGCGGGGAAGGGGATGGCTCCATGTCCTCTGGGGTTGGAGAAATGGGGGA
CAGCCAAGTCTCCTCCAACCCTACATCCAGCCCCCCTGGGGAGGCTCCTGCCCCCGTCTCTGTGGATAGT
GAGCCCAGCTGCAAGGGCGGCCTGCCCAGGGACAAACCCACCAAAAGGAAAGATGTTGTAGCACCAAAGA
GAGGCTCCCTGAAAGAGGCGTCTCCCGGGGCCTCCAAGCCCGGGAGCGCCCGGCGGAGCCAGGGGGCAGT
GGCCAAGTCTGTGCGGACCCTGACCGCCTCAGAGAACGAGAGCATGCGCAAGGTCATGCCCATCACCAAG
TCCAGCAGAGGCGCCGGCTGGAGGCGACCAGAGCTGTCATCCCGGGGGCCCTCCCAGAATCCCCCCAGCA
GCACAGATACTGTGTGGTCACGCCAGAACTCCGTGCGGAGGGCCTCCACAGGCGCCGAAGAGCAGAGGCT
GCCGCGGGGGAGCAGCGGCTCCAGCAGCACCCGTCCGGGGAGGGACGTTCCCCTGCAGCCCAGGGGTTCT
TTCAAGAAGCCCAGTGCCAAACCACTCAGGAACCTCCCCAGACAGAAGCCTGAGGAAAATAAGACCTGCC
GCGCCCACTCCGAGGGCCCTGAGAGTCCCAAAGAAGAGCCCAAGACCCCGTCAGTGCCCAGCGTCCCCCA
CGAACTACCCCGTGTCCCGAGCTTTGCCCGGAACACAGTGGCCTCCTCCTCTCGAAGCATGAGAACAGAT
CTTCCTCCCGTGGCCAAAGCCCCCGGCATCACTCGGACAGTGTCGCAGCGGCAGCTGAGGGTGAAAGGGG
ACCCCGAGGATGCCGCTCCCAAGGACAGCAGCACTTTGAGGCGAGCCAGCAGTGCCCGGGCCCCCAAGAA
GCGCCCAGAGTCTGCGGAGGGTCCCAGTGCCAACACGGAGGCCCCTCTGAAGGCCAGAGGGGCTGGGGAA
AGGGCCTCCCTCCGTCGGAAGGACTCCAGTCGGACCACGCTGGGGAGAATCCTCAATCCCTTACGGAAGT
GA

Translation (1143 aa):
MHVMNCVSLVSDKENGNIATAPGFMIGQTPPPAPPPPPPPPPPSPPCSCSREECPSSPPPPPPPPLPGEP
PIPPPPPGLPPTTHMNGYSHLGKKKRMRSFFWKTIPEEQVRGKTNIWTLAARQEHHYQIDTKTIEELFGQ
QEDTTKSSLPRRGRTLNSSFREAREEITILDAKRSMNIGIFLKQFKKSPRSIVEDIHQGKSEHYGSETLR
EFLKFLPESEEVKKLKAFSGDVSKLSLADSFLYGLIQVPNYSLRIEAMVLKKEFLPSCSSLYTDITVLRT
AIKELMSCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQKKDT
ILLNFSEKLHHVQKTARLSLENTEAELHLLFVRTKSLKENIQRDGELCQQMEDFLQFAIEKLRELECWKQ
ELQDEAYTLIDFFCEDKKTMKLDECFQIFRDFCTKFNKAVKDNHDREAQELRQLQRLKEQEQKQRSWATG
ELGAFGRSSSENDVELLTKKGAEGLLPFLHPRPISPSSPSYRPPNTRRSRLSLGPSADRELLTFLESSTG
SPEEPNKFHSLPRSSPRQARPTIACLEPAEVRHQDSSFAHKPQASGGQEEAPNPPSAQAHQLAAAQPENH
ASAFPRARRQGVSVLRKRYSEPVSLGSAQSPPLSPLALGIKEHELVTGLAQFNLQGSQGMEETSQLTLSD
FSPMELESVGHRGPQSLSASSSSLTPMGRDALGSLSPALEDGKAAPDEPGSAALGSVGSSDPENKDPRPL
FCISDTTDCSLTLDCSEGTDSRPRGGDPEEGGEGDGSMSSGVGEMGDSQVSSNPTSSPPGEAPAPVSVDS
EPSCKGGLPRDKPTKRKDVVAPKRGSLKEASPGASKPGSARRSQGAVAKSVRTLTASENESMRKVMPITK
SSRGAGWRRPELSSRGPSQNPPSSTDTVWSRQNSVRRASTGAEEQRLPRGSSGSSSTRPGRDVPLQPRGS
FKKPSAKPLRNLPRQKPEENKTCRAHSEGPESPKEEPKTPSVPSVPHELPRVPSFARNTVASSSRSMRTD
LPPVAKAPGITRTVSQRQLRVKGDPEDAAPKDSSTLRRASSARAPKKRPESAEGPSANTEAPLKARGAGE
RASLRRKDSSRTTLGRILNPLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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