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Report for CCDS713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
713.1 Public Homo sapiens 1 LMO4 24 110 108 CCDS HistoryNCBI Gene:8543Re-query CCDS DB by CCDS ID:713.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370542.1 ENSP00000359573.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370542.1Link to Ensembl Protein Viewer:ENSP00000359573.1Re-query CCDS DB by Nucleotide ID:ENST00000370542Re-query CCDS DB by Protein ID:ENSP00000359573
Original member Current member EBI ENST00000370544.10 ENSP00000359575.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370544.10Link to Ensembl Protein Viewer:ENSP00000359575.4Re-query CCDS DB by Nucleotide ID:ENST00000370544Re-query CCDS DB by Protein ID:ENSP00000359575
Original member Current member NCBI NM_001369491.1 NP_001356420.1 Accepted alive Link to Nucleotide Sequence:NM_001369491.1Link to Protein Sequence:NP_001356420.1Re-query CCDS DB by Nucleotide ID:NM_001369491Re-query CCDS DB by Protein ID:NP_001356420Link to BLAST:NP_001356420.1
Original member Current member NCBI NM_006769.4 NP_006760.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006769.4Link to Protein Sequence:NP_006760.1Re-query CCDS DB by Nucleotide ID:NM_006769Re-query CCDS DB by Protein ID:NP_006760Link to BLAST:NP_006760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356420.1 165 P61968 165 100% 0 0
NP_006760.1 165 P61968 165 100% 0 0

Chromosomal Locations for CCDS 713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87332016 87332251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87339536 87339632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87340047 87340202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87344788 87344796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGTGAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGACGGCCGGCTCCCTCTCCTGGAAGCGGTGCG
CAGGCTGCGGGGGCAAGATTGCGGACCGCTTTCTGCTCTATGCCATGGACAGCTATTGGCACAGCCGGTG
CCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATCGGCACGTCCTGTTACACCAAAAGTGGCATG
ATCCTTTGCAGAAATGACTACATTAGGTTATTTGGAAATAGCGGTGCTTGCAGCGCTTGCGGACAGTCGA
TTCCTGCGAGTGAACTCGTCATGAGGGCGCAAGGCAATGTGTATCATCTTAAGTGTTTTACATGCTCTAC
CTGCCGGAATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGAT
AGACCTACAGCTCTCATCAATGGCCATTTGAATTCACTTCAGAGCAATCCACTACTGCCAGACCAGAAGG
TCTGCTAA

Translation (165 aa):
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM
ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD
RPTALINGHLNSLQSNPLLPDQKVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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