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Report for CCDS1458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1458.1 Public Homo sapiens 1 SLC45A3 24 110 108 CCDS HistoryNCBI Gene:85414Re-query CCDS DB by CCDS ID:1458.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1458.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367145.4 ENSP00000356113.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367145.4Link to Ensembl Protein Viewer:ENSP00000356113.3Re-query CCDS DB by Nucleotide ID:ENST00000367145Re-query CCDS DB by Protein ID:ENSP00000356113
Original member Current member NCBI NM_033102.3 NP_149093.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033102.3Link to Protein Sequence:NP_149093.1Re-query CCDS DB by Nucleotide ID:NM_033102Re-query CCDS DB by Protein ID:NP_149093Link to BLAST:NP_149093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149093.1 553 Q96JT2 553 100% 0 0

Chromosomal Locations for CCDS 1458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205659234 205659671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205661861 205662126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205662833 205663618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205664485 205664656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGTCCAGAGGCTGTGGGTGAGCCGCCTGCTGCGGCACCGGAAAGCCCAGCTCTTGCTGGTCAACCTGC
TA
ACCTTTGGCCTGGAGGTGTGTTTGGCCGCAGGCATCACCTATGTGCCGCCTCTGCTGCTGGAAGTGGG
G
GTAGAGGAGAAGTTCATGACCATGGTGCTGGGCATTGGTCCAGTGCTGGGCCTGGTCTGTGTCCCGCTC
CTA
GGCTCAGCCAGTGACCACTGGCGTGGACGCTATGGCCGCCGCCGGCCCTTCATCTGGGCACTGTCCT
TG
GGCATCCTGCTGAGCCTCTTTCTCATCCCAAGGGCCGGCTGGCTAGCAGGGCTGCTGTGCCCGGATCC
C
AGGCCCCTGGAGCTGGCACTGCTCATCCTGGGCGTGGGGCTGCTGGACTTCTGTGGCCAGGTGTGCTTC
ACT
CCACTGGAGGCCCTGCTCTCTGACCTCTTCCGGGACCCGGACCACTGTCGCCAGGCCTACTCTGTCT
AT
GCCTTCATGATCAGTCTTGGGGGCTGCCTGGGCTACCTCCTGCCTGCCATTGACTGGGACACCAGTGC
C
CTGGCCCCCTACCTGGGCACCCAGGAGGAGTGCCTCTTTGGCCTGCTCACCCTCATCTTCCTCACCTGC
GTA
GCAGCCACACTGCTGGTGGCTGAGGAGGCAGCGCTGGGCCCCACCGAGCCAGCAGAAGGGCTGTCGG
CC
CCCTCCTTGTCGCCCCACTGCTGTCCATGCCGGGCCCGCTTGGCTTTCCGGAACCTGGGCGCCCTGCT
T
CCCCGGCTGCACCAGCTGTGCTGCCGCATGCCCCGCACCCTGCGCCGGCTCTTCGTGGCTGAGCTGTGC
AGC
TGGATGGCACTCATGACCTTCACGCTGTTTTACACGGATTTCGTGGGCGAGGGGCTGTACCAGGGCG
TG
CCCAGAGCTGAGCCGGGCACCGAGGCCCGGAGACACTATGATGAAGGCGTTCGGATGGGCAGCCTGGG
G
CTGTTCCTGCAGTGCGCCATCTCCCTGGTCTTCTCTCTGGTCATGGACCGGCTGGTGCAGCGATTCGGC
ACT
CGAGCAGTCTATTTGGCCAGTGTGGCAGCTTTCCCTGTGGCTGCCGGTGCCACATGCCTGTCCCACA
GT
GTGGCCGTGGTGACAGCTTCAGCCGCCCTCACCGGGTTCACCTTCTCAGCCCTGCAGATCCTGCCCTA
C
ACACTGGCCTCCCTCTACCACCGGGAGAAGCAGGTGTTCCTGCCCAAATACCGAGGGGACACTGGAGGT
GCT
AGCAGTGAGGACAGCCTGATGACCAGCTTCCTGCCAGGCCCTAAGCCTGGAGCTCCCTTCCCTAATG
GA
CACGTGGGTGCTGGAGGCAGTGGCCTGCTCCCACCTCCACCCGCGCTCTGCGGGGCCTCTGCCTGTGA
T
GTCTCCGTACGTGTGGTGGTGGGTGAGCCCACCGAGGCCAGGGTGGTTCCGGGCCGGGGCATCTGCCTG
GAC
CTCGCCATCCTGGATAGTGCCTTCCTGCTGTCCCAGGTGGCCCCATCCCTGTTTATGGGCTCCATTG
TC
CAGCTCAGCCAGTCTGTCACTGCCTATATGGTGTCTGCCGCAGGCCTGGGTCTGGTCGCCATTTACTT
T
GCTACACAGGTAGTATTTGACAAGAGCGACTTGGCCAAATACTCAGCGTAG


Translation (553 aa):
MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVCVPL
L
GSASDHWRGRYGRRRPFIWALSLGILLSLFLIPRAGWLAGLLCPDPRPLELALLILGVGLLDFCGQVCF
T
PLEALLSDLFRDPDHCRQAYSVYAFMISLGGCLGYLLPAIDWDTSALAPYLGTQEECLFGLLTLIFLTC
V
AATLLVAEEAALGPTEPAEGLSAPSLSPHCCPCRARLAFRNLGALLPRLHQLCCRMPRTLRRLFVAELC
S
WMALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDE
GVRMGSLGLFLQCAISLVFSLVMDRLVQRFG
T
RAVYLASVAAFPVAAGATCLSHSVAVVTASAALTGFTFSALQILPYTLASLYHREKQ
VFLPKYRGDTGG
A
SSEDSLMTSFLPGPKPGAPFPNGHVGAGGSGLLPPPPALCGASACDVSVRVVVGEPTEARVVPGRGICL
D
LAILDSAFLLSQVAPSLFMGSIVQLSQSVTAYMVSAAGLGLVAIYFATQVVFDKSDLAKYSA




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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