NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32758.1 Public Homo sapiens 17 CBX4 24 110 108 CCDS HistoryNCBI Gene:8535Re-query CCDS DB by CCDS ID:32758.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269397.9 ENSP00000269397.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269397.9Link to Ensembl Protein Viewer:ENSP00000269397.4Re-query CCDS DB by Nucleotide ID:ENST00000269397Re-query CCDS DB by Protein ID:ENSP00000269397
Original member Current member NCBI NM_003655.3 NP_003646.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003655.3Link to Protein Sequence:NP_003646.2Re-query CCDS DB by Nucleotide ID:NM_003655Re-query CCDS DB by Protein ID:NP_003646Link to BLAST:NP_003646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003646.2 560 O00257-1 560 100% 0 0

Chromosomal Locations for CCDS 32758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79833959 79835395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79835646 79835712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79837837 79837902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79839011 79839054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79839183 79839251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGAGCTGCCAGCTGTTGGCGAGCACGTCTTCGCGGTGGAGAGCATCGAGAAGAAGCGGATCCGCAAGG
GCAGAGTGGAGTATCTGGTGAAATGGAGAGGCTGGTCGCCCAAATATAACACGTGGGAACCGGAGGAGAA
CATCCTGGACCCCAGGCTGCTGATCGCCTTCCAGAACAGGGAACGGCAGGAGCAGCTGATGGGATATCGG
AAGAGAGGGCCGAAGCCCAAACCGCTAGTGGTGCAGGTGCCTACCTTTGCCCGTCGTTCCAATGTCCTGA
CCGGCCTCCAGGACTCCTCCACTGACAACCGTGCCAAGCTGGATTTGGGCGCGCAGGGGAAGGGCCAGGG
GCATCAGTACGAGCTCAACAGCAAGAAGCACCACCAGTACCAGCCGCACAGCAAGGAGCGGGCGGGCAAG
CCCCCGCCGCCGGGCAAGAGCGGCAAGTACTACTACCAGCTCAACAGCAAGAAGCACCACCCCTACCAGC
CCGACCCCAAAATGTACGACCTGCAGTACCAGGGCGGCCACAAGGAGGCGCCCAGCCCCACCTGCCCGGA
CCTGGGGGCCAAGAGCCACCCGCCCGACAAGTGGGCGCAAGGTGCGGGGGCCAAAGGCTACCTGGGGGCG
GTGAAGCCCCTGGCCGGTGCGGCGGGTGCTCCAGGCAAAGGCTCCGAGAAGGGCCCCCCCAACGGAATGA
TGCCGGCCCCCAAAGAGGCTGTGACGGGCAACGGGATTGGGGGCAAGATGAAGATAGTCAAGAACAAGAA
CAAGAACGGACGCATCGTGATCGTGATGAGCAAATACATGGAGAACGGCATGCAGGCGGTGAAGATCAAG
TCCGGCGAGGTGGCAGAGGGGGAGGCTCGCTCCCCCAGCCACAAGAAGCGGGCAGCCGACGAGCGCCACC
CTCCTGCCGACAGGACTTTTAAAAAGGCGGCGGGCGCAGAGGAGAAGAAGGTGGAGGCGCCGCCCAAGAG
GAGGGAGGAGGAGGTGTCCGGGGTTAGCGATCCGCAGCCCCAGGATGCCGGCTCCCGCAAGCTGTCCCCG
ACCAAGGAGGCCTTTGGAGAGCAGCCCCTGCAGCTCACCACCAAGCCCGACCTGCTTGCCTGGGACCCGG
CCCGGAACACGCACCCGCCCTCACACCACCCGCACCCGCACCCCCATCACCACCACCACCACCACCACCA
CCACCACCACGCCGTCGGCCTGAATCTCTCCCACGTGCGCAAGCGCTGCCTCTCCGAGACCCACGGCGAG
CGCGAGCCCTGCAAGAAGCGGCTGACTGCGCGCAGCATCAGCACCCCCACCTGCCTGGGGGGCAGCCCAG
CCGCTGAGCGCCCGGCCGACCTGCCACCAGCCGCCGCCCTCCCGCAGCCCGAGGTCATCCTGCTAGACTC
AGACCTGGATGAACCCATAGACTTGCGCTGCGTCAAGACGCGCAGCGAGGCCGGGGAGCCGCCCAGCTCC
CTCCAGGTGAAGCCCGAGACACCGGCGTCGGCGGCGGTGGCGGTGGCGGCGGCAGCGGCACCCACCACGA
CGGCGGAGAAGCCTCCAGCCGAGGCCCAGGACGAACCTGCAGAGTCGCTGAGCGAGTTCAAGCCCTTCTT
TGGGAATATAATTATCACCGACGTCACCGCGAACTGCCTCACCGTTACTTTCAAGGAGTACGTGACGGTG
TAG

Translation (560 aa):
MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLMGYR
KRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQYELNSKKHHQYQPHSKERAGK
PPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEAPSPTCPDLGAKSHPPDKWAQGAGAKGYLGA
VKPLAGAAGAPGKGSEKGPPNGMMPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIK
SGEVAEGEARSPSHKKRAADERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSP
TKEAFGEQPLQLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKTRSEAGEPPSS
LQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNIIITDVTANCLTVTFKEYVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH