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Report for CCDS50817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50817.1 Public Mus musculus 2 Gnas 23 108 98 CCDS HistoryNCBI Gene:14683Re-query CCDS DB by CCDS ID:50817.1Re-query CCDS DB by GeneID:14683See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 50817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109088.7 ENSMUSP00000104716.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109088.7Link to Ensembl Protein Viewer:ENSMUSP00000104716.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109088Re-query CCDS DB by Protein ID:ENSMUSP00000104716
Original member Current member EBI ENSMUST00000186907.6 ENSMUSP00000139839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186907.6Link to Ensembl Protein Viewer:ENSMUSP00000139839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186907Re-query CCDS DB by Protein ID:ENSMUSP00000139839
Original member Current member NCBI NM_201618.2 NP_963912.1 Accepted alive Link to Nucleotide Sequence:NM_201618.2Link to Protein Sequence:NP_963912.1Re-query CCDS DB by Nucleotide ID:NM_201618Re-query CCDS DB by Protein ID:NP_963912Link to BLAST:NP_963912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_963912.1 725 Q6R0H6 725 100% 0 0

Chromosomal Locations for CCDS 50817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174298040 174300217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGAGCCCGTCCCCGACGAGACTGGCAGTGAGATCAGTGGACCCCCAGAAGACTCCAAATCTGACATCCA
AAGCCCCTGCCAGGCCTTCGAGGAAGTCCGAGTGGGTGGAGACTACAGCCCACCTCCGGAGGAAGCCATG
CCATTCGAGACACAACAGCCCAGCCTGGGAGATTTCTGGCCCACCCTGGAGCAGCCAGGACCATCTGGGA
CCCCATCAGGCCTCCAAGCCTTCAACCCAGCGATTTTGGAGCCCGGGACCCCCACTGGCGCGAGCCCAGG
CCTGGGAGCCTATACCCCCCCACCAGAAGAAGCTATGCCATTTGAGTTCAACGAGCCTGCCCAGGGAGAC
CATAGCCAGCCTCCCTTGCAAGTCCCAGACCTTGCGCCAGGAGGTCCGGAAGCATTGGTCCCCAGAGCTC
TTCCCGCGGAGCCCGGGAACATCAGATTTGAAAACGCTGGCTTCCGAGAAGACTACAGCCCTCCCCCTGA
AGAATCTGTGCCATTTCAGGTCGGTGGAGAAGAATTCGGGGGCGATAGCCCACCCCCAGGACTCCCGCGA
GTCATCCCACAAATCGGCATTGGCGGCGAGTTCCCGACAGTCGCGGTCCCGAGTGCGCTCTGCCTCGCTC
CCGCCGAGAACGCGCCTCCCCTCTGGGTCCGAGGCGCCATTGACAGACCATTCCGCGAGGCTGTCAGATC
TCCTCCTAACTTCGCATGCGACAGCCCCCCGATGGAGATCACCAGACCCCTGCTTGAGATTGGCAGAGCC
TCCATTGGGGTCGACGACGACACCGCTGTCAATATGGACAGCCCCCCAATCGCAAGTGATGGCCCGCCCA
TCGAAGTCTCGGGAGCCCCAGATAAGAGCGAGTGCGCAGAGAGACCCCCAGTTGAGCGAGAAGCAGCCGA
GATGGAAGGAAGCCCTACCACCGCCACTGCGGTGGAAGGAAAAGTCCCCTCTCCGGAGAGAGGGGACGGA
TCTTCCACCCAGCCTGAAGCAATGGATGCCAAGCCAGCCCCTGCTGCCCAAGCCGTCTCTACCGGATCTG
ATGCTGGAGCTCCTACGGATTCCGCGATGCTCACAGATAGCCAGAGCGATGCCGGAGAAGACGGGACAGC
CCCAGGAACGCCTTCAGATCTCCAGTCGGATCCTGAAGAACTCGAAGAAGCCCCAGCTGTCCGCGCCGAT
CCTGACGGAGGGGCAGCCCCAGTCGCCCCAGCCACTCCTGCCGAGTCCGAGTCTGAAGGCAGCAGAGATC
CAGCCGCCGAGCCAGCCTCCGAGGCAGTCCCTGCCACCACGGCCGAGTCTGCCTCCGGGGCAGCCCCTGT
CACCCAGGTGGAGCCCGCAGCCGCGGCAGTCTCTGCCACCCTGGCGGAGCCTGCCGCCCGGGCAGCCCCT
ATCACCCCCAAGGAGCCCACTACCCGGGCAGTCCCCTCTGCTAGAGCCCATCCGGCCGCTGGAGCAGTCC
CTGGCGCCCCAGCAATGTCAGCCTCTGCTAGGGCAGCTGCCGCTAGGGCAGCCTATGCAGGTCCACTGGT
CTGGGGAGCCAGGTCACTCTCAGCTACTCCCGCCGCTCGGGCATCCCTTCCTGCCCGCGCAGCAGCTGCC
GCCCGGGCAGCCTCTGCTGCCCGCGCAGTCGCTGCTGGCCGGTCAGCCTCTGCCGCCCCCAGCAGGGCCC
ATCTTAGACCCCCCAGCCCCGAGATCCAGGTTGCTGACCCGCCTACTCCGCGGCCTCCTCCGCGGCCGAC
TGCCTGGCCTGACAAGTACGAGCGGGGCCGAAGCTGCTGCAGGTACGAGGCATCGTCTGGCATCTGCGAG
ATCGAGTCCTCCAGTGATGAGTCGGAAGAAGGGGCCACCGGCTGCTTCCAGTGGCTTCTGCGGCGAAACC
GCCGCCCTGGCCTGCCCCGGAGCCACACGGTCGGGAGCAACCCAGTCCGCAACTTCTTCACCCGAGCCTT
CGGAAGCTGCTTCGGTCTATCCGAGTGTACCCGATCACGATCCCTCAGCCCCGGGAAGGCCAAGGATCCT
ATGGAGGAGAGGCGCAAACAGATGCGCAAAGAAGCCATTGAGATGCGAGAGCAGAAGCGCGCAGATAAGA
AACGCAGCAAGCTCATCGACAAGCAACTGGAGGAGGAGAAGATGGACTACATGTGTACACACCGCCTGCT
GCTTCTAG

Translation (725 aa):
MSPSPTRLAVRSVDPQKTPNLTSKAPARPSRKSEWVETTAHLRRKPCHSRHNSPAWEISGPPWSSQDHLG
PHQASKPSTQRFWSPGPPLARAQAWEPIPPHQKKLCHLSSTSLPRETIASLPCKSQTLRQEVRKHWSPEL
FPRSPGTSDLKTLASEKTTALPLKNLCHFRSVEKNSGAIAHPQDSRESSHKSALAASSRQSRSRVRSASL
PPRTRLPSGSEAPLTDHSARLSDLLLTSHATAPRWRSPDPCLRLAEPPLGSTTTPLSIWTAPQSQVMARP
SKSREPQIRASAQRDPQLSEKQPRWKEALPPPLRWKEKSPLRREGTDLPPSLKQWMPSQPLLPKPSLPDL
MLELLRIPRCSQIARAMPEKTGQPQERLQISSRILKNSKKPQLSAPILTEGQPQSPQPLLPSPSLKAAEI
QPPSQPPRQSLPPRPSLPPGQPLSPRWSPQPRQSLPPWRSLPPGQPLSPPRSPLPGQSPLLEPIRPLEQS
LAPQQCQPLLGQLPLGQPMQVHWSGEPGHSQLLPPLGHPFLPAQQLPPGQPLLPAQSLLAGQPLPPPAGP
ILDPPAPRSRLLTRLLRGLLRGRLPGLTSTSGAEAAAGTRHRLASARSSPPVMSRKKGPPAASSGFCGET
AALACPGATRSGATQSATSSPEPSEAASVYPSVPDHDPSAPGRPRILWRRGANRCAKKPLRCESRSAQIR
NAASSSTSNWRRRRWTTCVHTACCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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