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Report for CCDS567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
567.1 Public Homo sapiens 1 PRPF38A 24 110 108 CCDS HistoryNCBI Gene:84950Re-query CCDS DB by CCDS ID:567.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257181.10 ENSP00000257181.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257181.10Link to Ensembl Protein Viewer:ENSP00000257181.8Re-query CCDS DB by Nucleotide ID:ENST00000257181Re-query CCDS DB by Protein ID:ENSP00000257181
Original member Current member NCBI NM_032864.4 NP_116253.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032864.4Link to Protein Sequence:NP_116253.2Re-query CCDS DB by Nucleotide ID:NM_032864Re-query CCDS DB by Protein ID:NP_116253Link to BLAST:NP_116253.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116253.2 312 Q8NAV1-1 312 100% 0 0

Chromosomal Locations for CCDS 567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52404750 52404879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52405680 52405839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52408569 52408690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52411115 52411200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52412514 52412624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52413879 52413991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52414621 52414647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52414762 52414859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52415338 52415386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52416648 52416690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGA
TCATTCGAACGCGAATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGT
AGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTT
CTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTAGAGTTTATCAAAAATG
AAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTACATGAGGCTGACAGGCACTGCAATTGATTGCTA
CAAGTACTTGGAACCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGAAATGGGGAGTTTGAA
TTGATGCATGTTGATGAGTTTATTGATGAACTATTGCACAGTGAGAGAGTCTGTGATATCATTCTGCCCC
GACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGA
CATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCT
GATCACCGCCGGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGGAGGA
GTAGGAGCCGGTCTCCCAGAAGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAG
GCATCGGAGCAAGAGTCCAAGACGTCACCGCAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAG
TCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCCCGAAAGGTCTAAGAAGAGCC
ACAAGAAGAGCCGGAGAGGGAATGAGTAA

Translation (312 aa):
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPF
LCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFE
LMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSP
DHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSK
SPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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