CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS8448.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
8448.2 |
Public |
Homo sapiens |
11 |
TBRG1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84897](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:8448.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 8448.1 |
The coding region has been updated to represent an alternative 5' splice pattern, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 8448.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000441174.8 |
ENSP00000409016.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000441174.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000409016.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000441174](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000409016](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032811.3 |
NP_116200.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032811.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116200.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032811](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116200](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116200.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_116200.2 |
411 |
Q3YBR2-1 |
411 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 8448.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1236 nt): ATGAGCCTGCTGGACGGCCTCGCTTCCTCGCCGCGGGCTCCGCTGCAGTCCAGCAAGGCCAGGATGAAAA AGCTCCCGAAGAAGAGCCAGAATGAGAAGTACCGGCTGAAGTACCTGCGGCTGCGCAAAGCGGCCAAGGC CACGGTGTTTGAAAATGCTGCTATTTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAGCAAAA GAAGAAAGAAGGTACTTGCTAAAGAAGCTCCTCCAGCTTCAGGCTCTAACTGAAGGGGAAGTACAGGCTG CAGCTCCTTCCCACAGTTCCAGTTTGCCCCTGACTTATGGTGTGGCCAGCTCTGTGGGAACTATACAGGG AGCTGGGCCTATTTCAGGGCCCAGCACTGGGGCTGAGGAACCATTTGGGAAGAAAACTAAGAAGGAGAAA AAAGAAAAAGGCAAAGAGAACAACAAACTGGAAGTTCTGAAGAAAACATGCAAGAAAAAGAAAATGGCGG GAGGTGCTCGCAAGCTGGTTCAGCCCATTGCCCTGGATCCCTCAGGACGGCCTGTGTTCCCCATCGGACT AGGGGGTCTAACAGTATATAGCCTGGGGGAGATCATCACCGACCGACCTGGCTTTCATGATGAGAGTGCC ATCTACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCAGAAGTGTCTAT ATACCTGTCAGATCAAGGATGGTGGTGTGCAGCCTCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGAA TGCCATTGTCAGCTCTTCTGCAGATGCTTGTCATGCAGAACTGCTCAGGACTATAAGCACTACTATGGGG AAACTAATGCCTAACCTGCTTCCAGCTGGAGCTGACTTTTTTGGATTTTCTCATCCAGCCATCCACAACC TGATCCAGAGCTGTCCAGGAGCTCGAAAATGCATCAATTACCAGTGGGTGAAATTTGATGTGTGCAAACC TGGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAATGATGCAGCTATGAGCTTTGAAGCCTTTCAGAGA CAGATCTTTGATGAAGATCAGAATGATCCCCTTCTGCCAGGATCCTTGGACCTCCCAGAGCTTCAGCCTG CAGCCTTTGTGTCTTCTTACCAGCCCATGTACCTGACACATGAACCCTTGGTAGATACTCACCTGCAGCA CTTGAAGTCTCCATCACAGGGTAGCCCAATTCAGTCTTCAGATTGA
Translation (411 aa): MSLLDGLASSPRAPLQSSKARMKKLPKKSQNEKYRLKYLRLRKAAKATVFENAAICDEIARLEEKFLKAK EERRYLLKKLLQLQALTEGEVQAAAPSHSSSLPLTYGVASSVGTIQGAGPISGPSTGAEEPFGKKTKKEK KEKGKENNKLEVLKKTCKKKKMAGGARKLVQPIALDPSGRPVFPIGLGGLTVYSLGEIITDRPGFHDESA IYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQPQFEIVPEDDPQNAIVSSSADACHAELLRTISTTMG KLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGDGQLPEGLPENDAAMSFEAFQR QIFDEDQNDPLLPGSLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD
|