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Report for CCDS15854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15854.1 Public Mus musculus 2 Rapgef1 23 108 98 CCDS HistoryNCBI Gene:107746Re-query CCDS DB by CCDS ID:15854.1Re-query CCDS DB by GeneID:107746See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102872.10 ENSMUSP00000099936.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102872.10Link to Ensembl Protein Viewer:ENSMUSP00000099936.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102872Re-query CCDS DB by Protein ID:ENSMUSP00000099936
Original member Current member NCBI NM_054050.2 NP_473391.1 Accepted alive Link to Nucleotide Sequence:NM_054050.2Link to Protein Sequence:NP_473391.1Re-query CCDS DB by Nucleotide ID:NM_054050Re-query CCDS DB by Protein ID:NP_473391Link to BLAST:NP_473391.1

Chromosomal Locations for CCDS 15854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29620003 29620063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29679133 29679269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29679737 29679850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29686105 29686283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29689107 29689263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29698997 29699085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29699686 29699838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29700186 29700306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29700668 29700851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29702193 29702678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29707198 29707400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29722224 29722309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29724773 29724884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29726206 29726281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29730528 29730612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29732827 29732919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29733577 29733762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29734200 29734284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29734425 29734519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29735802 29735880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29735984 29736085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29736572 29736669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29737327 29737455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29737920 29738070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3261 nt):
ATGAGCAGCGGCCTCGGCCTCCGGCGCAGCCCGGAAATGTCCGGCAAGATCGAGAAAGCAGACTCTCAGC
GTTCTCATCTCTCCTCCTTCACCATGAAGCTGATGGACAAATTCCACTCTCCCAAAATCAAGAGAACACC
ATCCAAGAAGGGAAAGCCAGCCGAGGTGTCGAAGATTCCTGAGAAGCCTGTGAGCAAAGAGGCAAGAGAC
AGATTTCTACCAGAGGGCTACCCTATCCCCTTGGATCTGGAGCAGCAGGCAGTAGAATTTATGTCCACCA
GTGCTGTGGCTTCCAGGTCTCAGAGGCAGAAGAACCTGTGCTGGCTGGAGGAGAAAGAGAAGGAGGTTGT
CAGTGCCTTGCGCTACTTTAAGACCATTGTGGACAAAATGGCCATTGATAAGAAGGTTCTGGAGATGCTC
CCGGGGTCAGCCAGCAAGGTGCTGGAGGCCATCTTACCCCTGGTGCAGACTGACCCTCGGATCCAGCACA
GCTCAGCCCTCTCCTCCTGTTATAGCCGAGTATACCAGAGCCTCGCCAACCTTATCCGATGGTCTGACCA
GGTGATGCTAGAGGGCGTGAACTCAGAAGATAAGGAGATGGTGACAACTGTGAAGGGCGTTATCAAAGCT
GTCCTGGACGGAGTGAAGGAGCTAGTGAGGCTAACCATTGAGAAGCAGGGGCGGCCATCGCCAACAAGCC
CAGTGAAGCCCAGTTCCCCAGCCAGCAAGCCTGATGGCCAGCCTGAGCTCCCTCTGACAGACCGAGAAAT
GGAGATTCTGAACAAGACGACAAGTGTGTCACCATCTGCTGAACTGCTCCCAGACTCCACCAGTGAAGAG
GTCGCACCCCCCAAGCCCCCTTTACCTGGCATCCGGGTGGTTGATAACAGTCCACCAGCATTACCACCCA
AGAAAAGGCAGTCTGCTCCATCCCCCACTCGGGTGGCTGTGGTAGCCCCAATGAGTCGGGCTACCAGTGG
CTCCAGTTTGCCTGTTGGAATCAATAGGCAGGACTTTGATGTTGAATGTTACACCCAGAGGCGCCTGTCA
GGAGGCAGCCGCTCCTGCGGTGGTGAGTCTCCTCGCCTGTCCCCCTGCAGCAGCACAGGCAAGCTCAGCC
GCTCAGACGAGCAGCTGTCCTCCCTGGACAGGGATAGTGGGCAGTGCTCACGGAACACAAGCTGTGAAAC
ACTAGATCACTACGACCCCGACTATGAATTCCTCCAGCAAGATCTCTCCAATGCAGACCAGATCCCTCCA
CAGGCAGCCTGTAACCTCAGCCCTCTGCCGGAGTCCCTGGGGGAATCTGGGCCTCCATTTCTTGGCCACC
CTTTCCAGCTGCCTTTGGGCAGCTGTCTGCAGCAGGAGGGACAGCAGACAGACACTCCACCTGCCCTTCC
GGAGAAGAAGCGTAGGAGCGCAGTCTCCCAGACCACGGACAGCTCTGGCTGCAGGGTGTCCTATGAGCGA
CACCCCTCACAGTATGACAACATCTCAGAGGGTGACCTGCAGAACCCAGTCCCAGTCCAGCCTGTGCCCT
ACCCACCCTTTGCTGCTGTCCTGCCCTTTCAGCAGGGAGCTTCCTCTGCCTCTGCTGAGTTTGTGGGTGA
TTTCAGTGTTCCTGAGTTGGCGGGTGACACAGAGAAGCCACCTCCTCTACCAGAGAAGAAGAACAAGCAC
ATGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGC
AGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTGTACGGCTTCAGCGAGTCCTTCTG
CGGTAGTGATTCCACGCAGGAGCTGGCCCCTCCACCCGCTCTGCCCCCCAAGCAACGGCAGCTGGAACCA
CCATCTGGGAAGGACGGACATCCCAGAGATCCTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAA
ATGGGGAAAGGTCCCCAAAGTCACTGGATGGTCTGGAGTCAGCGCAGTCAGAAGAGGAAGTGGATGAACT
GTCCCTCATTGACCACAATGAAATTATGGCCAGGCTGACACTCAAGCAAGAGGGTGATGATGGGCCAGAT
GTTCGTGGTGGTTCAGGAGACATCTTACTGGTCCATGCTACTGAGACAGACAGAAAAGACCTGGTGCTGT
ACTGTGAAGCCTTCCTGACCACCTACAGGACCTTCATCAGCCCGGAGGAGCTCATCAAGAAGCTGCAGTA
CCGGTACGAGAAGTTCTCTCCCTTTGCTGACACGTTCAAGAAGCGAGTGAGCAAGAACACATTCTTTGTG
CTGGTTCGAGTGGTGGATGAGCTCTGCCTGGTGGAGCTGACAGAGGAGATCCTGAAGCTGCTGATGGAGC
TGGTCTTCCGCCTAGTGTGCAGCGGAGAGCTCAGCCTGGCCAGAGTCCTCCGGAAGAACATTCTGGACAA
GGTGGACCAGAAGAAGCTGCTCAGGTGTGCCCATTCCGACCAGCCTCTGGCAGCCAGGGGTGTTGCAGCC
AGGCCAGGAACCTTGCATGATTTCCACAGCCACGAGATAGCTGAGCAGCTGACACTGCTGGATGCCGAGC
TTTTCTACAAGATAGAGATTCCTGAAGTTTTGCTTTGGGCCAAAGAGCAGAATGAGGAGAAGAGTCCCAA
TCTGACCCAGTTCACAGAGCACTTCAACAACATGTCCTACTGGGTGCGGTCCATCATCATGCTGCAGGAG
AAGGCCCAGGACCGGGAGAGGCTGCTCCTCAAGTTCATCAAGATCATGAAGCACCTGCGCAAGCTCAACA
ACTTCAACTCCTACCTGGCCATCCTCTCAGCACTAGACTCGGCCCCCATCCGCAGACTGGAGTGGCAGCG
GCAGACCTCAGAGGGCCTGGCTGAGTACTGCACATTGATTGACAGCTCATCCTCCTTCCGAGCCTACCGG
GCTGCTCTCTCAGAGGTGGAGCCCCCATGTATCCCATACCTAGGTCTGATTCTGCAAGACCTGACCTTCG
TTCACCTGGGAAACCCAGATTATATTGACGGGAAAGTAAACTTCTCCAAGCGGTGGCAACAGTTCAACAT
ATTGGACAGCATGCGGTGCTTCCAGCAGGCGCACTATGAAATCCGGAGAAACGACGACATCATAAATTTC
TTCAATGACTTCAGTGACCACCTGGCCGAGGAAGCCCTGTGGGAACTCTCTCTGAAGATCAAGCCTAGGA
ACATAACAAGGCGGAAAACAGACCGCGAAGAGAAGACCTAG

Translation (1086 aa):
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVSKEARD
RFLPEGYPIPLDLEQQAVEFMSTSAVASRSQRQKNLCWLEEKEKEVVSALRYFKTIVDKMAIDKKVLEML
PGSASKVLEAILPLVQTDPRIQHSSALSSCYSRVYQSLANLIRWSDQVMLEGVNSEDKEMVTTVKGVIKA
VLDGVKELVRLTIEKQGRPSPTSPVKPSSPASKPDGQPELPLTDREMEILNKTTSVSPSAELLPDSTSEE
VAPPKPPLPGIRVVDNSPPALPPKKRQSAPSPTRVAVVAPMSRATSGSSLPVGINRQDFDVECYTQRRLS
GGSRSCGGESPRLSPCSSTGKLSRSDEQLSSLDRDSGQCSRNTSCETLDHYDPDYEFLQQDLSNADQIPP
QAACNLSPLPESLGESGPPFLGHPFQLPLGSCLQQEGQQTDTPPALPEKKRRSAVSQTTDSSGCRVSYER
HPSQYDNISEGDLQNPVPVQPVPYPPFAAVLPFQQGASSASAEFVGDFSVPELAGDTEKPPPLPEKKNKH
MLAYMQLLEDYSEPQPSMFYQTPQSEHIYQQKNKMLMEVYGFSESFCGSDSTQELAPPPALPPKQRQLEP
PSGKDGHPRDPSVSSASGKDSRENGERSPKSLDGLESAQSEEEVDELSLIDHNEIMARLTLKQEGDDGPD
VRGGSGDILLVHATETDRKDLVLYCEAFLTTYRTFISPEELIKKLQYRYEKFSPFADTFKKRVSKNTFFV
LVRVVDELCLVELTEEILKLLMELVFRLVCSGELSLARVLRKNILDKVDQKKLLRCAHSDQPLAARGVAA
RPGTLHDFHSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSIIMLQE
KAQDRERLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQRQTSEGLAEYCTLIDSSSSFRAYR
AALSEVEPPCIPYLGLILQDLTFVHLGNPDYIDGKVNFSKRWQQFNILDSMRCFQQAHYEIRRNDDIINF
FNDFSDHLAEEALWELSLKIKPRNITRRKTDREEKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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