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Report for CCDS18408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18408.1 Public Mus musculus 4 Mier1 23 108 98 CCDS HistoryNCBI Gene:71148Re-query CCDS DB by CCDS ID:18408.1Re-query CCDS DB by GeneID:71148See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030247.10 ENSMUSP00000030247.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030247.10Link to Ensembl Protein Viewer:ENSMUSP00000030247.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030247Re-query CCDS DB by Protein ID:ENSMUSP00000030247
Original member Current member EBI ENSMUST00000106858.7 ENSMUSP00000102471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106858.7Link to Ensembl Protein Viewer:ENSMUSP00000102471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106858Re-query CCDS DB by Protein ID:ENSMUSP00000102471
Original member NCBI NM_001286222.1 NP_001273151.1 Updated not alive Link to Nucleotide Sequence:NM_001286222.1Link to Protein Sequence:NP_001273151.1Re-query CCDS DB by Nucleotide ID:NM_001286222Re-query CCDS DB by Protein ID:NP_001273151
Current member NCBI NM_001286222.2 NP_001273151.1 Accepted alive Link to Nucleotide Sequence:NM_001286222.2Link to Protein Sequence:NP_001273151.1Re-query CCDS DB by Nucleotide ID:NM_001286222Re-query CCDS DB by Protein ID:NP_001273151Link to BLAST:NP_001273151.1
Original member NCBI NM_027696.3 NP_081972.2 Updated not alive Link to Nucleotide Sequence:NM_027696.3Link to Protein Sequence:NP_081972.2Re-query CCDS DB by Nucleotide ID:NM_027696Re-query CCDS DB by Protein ID:NP_081972
Current member NCBI NM_027696.4 NP_081972.2 Accepted alive Link to Nucleotide Sequence:NM_027696.4Link to Protein Sequence:NP_081972.2Re-query CCDS DB by Nucleotide ID:NM_027696Re-query CCDS DB by Protein ID:NP_081972Link to BLAST:NP_081972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273151.1 528 Q5UAK0-2 528 100% 0 0
NP_081972.2 528 Q5UAK0-2 528 100% 0 0

Chromosomal Locations for CCDS 18408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 103118256 103118315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103127273 103127297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103130966 103131111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103139358 103139516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103140111 103140243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103140837 103140901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103143134 103143206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103148299 103148450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103149124 103149205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103150534 103150628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103155487 103155614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103159682 103159821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103162423 103162751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGTTTATGTTTAATTGGTTTACAGACTGTCTCTGGATTCTTTTCCTGTCAAATTACAAGCCATCTGTTG
AGTCTTCAAGTCCAGGAGGCTCAGCAACATCAGAGGACCATGAGTTTGATCCATCAGCTGACATGCTGGT
TCATGATTTTGATGATGAGCGAACATTAGAAGAAGAAGAAATGATGGAAGGAGAGACAAACTTCAGTTCT
GAAATAGAGGATCTTGCGAGGGAAGGCGACATGCCAATCCACGAGCTGCTCAGCCTCTATGGTTATGACA
GCACTGTTCGGTTACCTGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGGTGAAGATGATGAAGATGC
TGATAATGATGATAACAGTGGCTGTAGTGGAGAAAATAAAGAAGAGAATATAAAGGATTCATCGGGTCAG
GAGGATGAAACTCAGTCTTCCAATGATGATCCCTCACAGTCTGTTACTTCCCAAGATGCTCAGGAAATAA
TCCGCCCACGTCGATGTAAATATTTTGATACAAATAGTGAAATAGAAGAAGAATCTGAAGAAGATGAAGA
TTATATTCCCTCAGAAGACTGGAAAAAGGAAATCATGGTGGGCTCCATGTTTCAAGCTGAGATTCCAGTT
GGTGTTTGTAGATACAAAGAAAATGAAAAAGTGTATGAAAATGATGATCAGCTTCTGTGGGATCCAGAGT
GTTTACCAGAAGAGAAAGTGGTTGTCTTTCTTAAGGATGCGTCTAGAAGGACAGGGGATGAGAAAGGTGT
GGAAGCAATCCCTGAAGGCTCGCATATCAAAGACAATGAGCAGGCTTTATATGAGTTGGTTAAATGCAGC
TTTGATACGGAAGAAGCCTTGAGAAGACTGAGATTTAATGTCAAAGCAGCTCGAGAGGAGTTATCTGTGT
GGACAGAGGAAGAGTGTAGAAATTTTGAGCAAGGGCTGAAGGCCTATGGAAAAGATTTTCATCTGATTCA
GGCTAATAAAGTCCGAACAAGATCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAAGTCTGAG
CGCTATGATTTCTTTGCTCAGCAAACAAGGTTTGGAAAAAAGAAATATAATCTTCATCCTGGTGTAACGG
ATTACATGGATCGTCTTTTGGATGAAAGTGAAAGTGCTGCTTCTAGCCGAGCACCATCCCCCCCTCCCAC
TGCCTCAAATAGCAGTAACAGCCAGTCCGAGAAAGAAGATGGCGCTGTCAGCAGTAGGAATCAGAACGGT
GTCTCATCTAATGGACCAGGAGAAATACTAAACAAAGAAGAAGTAAAAGTTGAAGGGTTACATGTTAATG
GACCAACAGGTGGAAATAAGAAACCACTTCTTACAGATATGGACACTAATGGTTATGAAGCAAATAACCT
GACCACTGACCCAAAACTTGCCCATATGACTGCAAGAAATGAAAATGATTTTGATGAAAAAAATGAGAGA
CCTGCCAAAAGGCGGCGGATAAACAGCAGTGGGAAAGAAAGTCCGGGCTCATCTGAGTTTTTCCAGGAAG
CAGTCTCACATGGGAAGTTTGAGGAACATGAAAACACGAATGACTAA

Translation (528 aa):
MFMFNWFTDCLWILFLSNYKPSVESSSPGGSATSEDHEFDPSADMLVHDFDDERTLEEEEMMEGETNFSS
EIEDLAREGDMPIHELLSLYGYDSTVRLPEEEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQ
EDETQSSNDDPSQSVTSQDAQEIIRPRRCKYFDTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPV
GVCRYKENEKVYENDDQLLWDPECLPEEKVVVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCS
FDTEEALRRLRFNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSE
RYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGAVSSRNQNG
VSSNGPGEILNKEEVKVEGLHVNGPTGGNKKPLLTDMDTNGYEANNLTTDPKLAHMTARNENDFDEKNER
PAKRRRINSSGKESPGSSEFFQEAVSHGKFEEHENTND


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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