NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44994.1 Public Homo sapiens 12 SRRM4 24 110 108 CCDS HistoryNCBI Gene:84530Re-query CCDS DB by CCDS ID:44994.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267260.5 ENSP00000267260.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267260.5Link to Ensembl Protein Viewer:ENSP00000267260.4Re-query CCDS DB by Nucleotide ID:ENST00000267260Re-query CCDS DB by Protein ID:ENSP00000267260
Original member Current member NCBI NM_194286.4 NP_919262.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194286.4Link to Protein Sequence:NP_919262.2Re-query CCDS DB by Nucleotide ID:NM_194286Re-query CCDS DB by Protein ID:NP_919262Link to BLAST:NP_919262.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919262.2 611 A7MD48 611 100% 0 0

Chromosomal Locations for CCDS 44994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118981883 118982013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119102236 119102382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119114278 119114364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119116937 119117008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119120250 119120276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119122070 119122120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119125381 119125479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119130678 119130834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119145381 119145685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119151017 119151220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119153539 119153649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119154243 119154383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119156495 119156798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGCGAGCGTTCAGCAAGGCGAGAAGCAGCTTTTTGAGAAGTTCTGGCGAGGAACCTTCAAAGCGGTGG
CCACCCCCCGTCCCGAGAGCATCATTGTCGCCAGTATCACGGCCCGCAAGCCGCTGCCAAGGACAGAGCC
CCAGAATAACCCCGTTGTCCCAGCTCAGGATGGACCCTCAGAAAAGCTGGGTCAGCATCTGGCCACCGAG
CCCTTGGGCACCAACAGTTGGGAGAGAGACAAGACCTGTCGGGAACTGGGTGCCACCAGAGGACACAGTG
CCTCTCATGACAAAGACTTGACACCACCACCTTCCTCCAGGGGAAAGAAGAAAAAGAAGAAATCCACTCG
GAAGAAGAGAAGGAGGTCCTCATCCTATAGCCCATCGCCTGTCAAGAAAAAGAAGAAGAAAAGTTCCAAG
AAACACAAGCGACGCAGGTCATTCTCCAAGAAGAGAAGGCACAGCTCCTCTAGCCCAAAAAGCAAAAGAA
GAGATGAGAAGAGGCACAAGAAACAATCTCGAAGCCGGCCCCGAAAGTCTCACCGCCACCGCCATCACCG
CTGCCCCTCGCGGTCCCAGAGCTCGGAGTCCCGCCCCTCAAGCTGTGAGAGCAGGCACCGCGGCCGGTCC
CCTGAGGAAGGGCAGAAGTCCCGCCGAAGGCACTCCCGCCGCTGCTCCAAGACCCTCTGCAAGGACAGCC
CTGAGGCCCAGTCCAGTCGCCCGCCCAGTCAACCCCTCCAGATGCTTGGCTACCTGTCAGCCAGGGGTGT
AATCACTGGGTCGGGGTCTGCTGCTGACCTCTTTACCAAAACAGCCAGCCCGCTCACCACCTCGCGAGGA
CGTTCCCAGGAGTACGACTCAGGAAATGACACGTCCTCGCCACCCTCCACGCAAACCAGCTCAGCCAGGT
CTCGGGGCCAGGAGAAGGGGAGCCCCAGTGGGGGCTTGAGCAAGAGCCGGGAGCTCAACAGTGGCAACAC
CTCTGATTCAGGGAACTCCTTCACCACCTCCTCACCCCAGAACAAGGGGGCCATGTTGGAGAATCTCTCC
CCCACCAGCAGGGGCAGAGAGTCAAGGGGATTTCAGTCACCGTGTCTGGAATGTGCCGAAGTGAAGAAGT
CCAGTTTGGTCCCATCCACAGCCCGGAGCTCACCCATGAAAGGGTGTTCCCGCAGCTCCTCCTATGCCAG
CACCCGATCCTCCAGTCACTCGTCCCGATCCCCAAATCCCAGGGCTTCCCCCAGGTACACCCAAAGCCGA
TCCACCTCTTCTGAAAAAAGGTCCTACTCCCGCTCTCCCAGCTATTCCTCCAAGTCTGGCAAGAGGAGCC
CGCCCAGCAGAAGCTCTAGGTCCCGCCGCAGCCCTAGCTACTCCCGCTACAGCCCCAGCAGGGAGCGGGA
TCCCAAATACAGTGAGAAGGACTCGCAGCAGCGGGAGCGCGAGCGAGCGCGTCGGAGACGTCGGTCCTAC
TCGCCTATGAGAAAGCGCCGGAGAGACTCCCCGAGCCACCTGGAGGCCCGGAGGATAACCAGTGCCCGGA
AACGCCCCATCCCCTACTATCGGCCCAGCCCCTCCTCATCCGGCAGCCTCAGCAGCACCTCCTCCTGGTA
CAGCAGCAGCAGTAGCCGCTCGGCCAGCCGCAGCTACTCCCGGAGCCGGAGTCGGAGCCGGAGCCGGAGA
CGGAGCCGGACCCGCACGAGCAGCAGCTCTAGCTCCCGCAGCCCTAGTCCGGGCTCCCGCAGCCGGAGCC
GGAGCAGGAGCCGGAGCCGGAGCCGGAGCAGGAGCCAGAGCCGGAGCTACAGCTCAGCAGACAGCTACTC
CAGCACGAGGCGCTAA

Translation (611 aa):
MASVQQGEKQLFEKFWRGTFKAVATPRPESIIVASITARKPLPRTEPQNNPVVPAQDGPSEKLGQHLATE
PLGTNSWERDKTCRELGATRGHSASHDKDLTPPPSSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSK
KHKRRRSFSKKRRHSSSSPKSKRRDEKRHKKQSRSRPRKSHRHRHHRCPSRSQSSESRPSSCESRHRGRS
PEEGQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSARGVITGSGSAADLFTKTASPLTTSRG
RSQEYDSGNDTSSPPSTQTSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNSFTTSSPQNKGAMLENLS
PTSRGRESRGFQSPCLECAEVKKSSLVPSTARSSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSR
STSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSY
SPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRR
RSRTRTSSSSSSRSPSPGSRSRSRSRSRSRSRSRSQSRSYSSADSYSSTRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH