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Report for CCDS10666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10666.1 Public Homo sapiens 16 DOC2A 24 110 108 CCDS HistoryNCBI Gene:8448Re-query CCDS DB by CCDS ID:10666.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350119.9 ENSP00000340017.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350119.9Link to Ensembl Protein Viewer:ENSP00000340017.4Re-query CCDS DB by Nucleotide ID:ENST00000350119Re-query CCDS DB by Protein ID:ENSP00000340017
Original member Current member EBI ENST00000564944.5 ENSP00000455196.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564944.5Link to Ensembl Protein Viewer:ENSP00000455196.1Re-query CCDS DB by Nucleotide ID:ENST00000564944Re-query CCDS DB by Protein ID:ENSP00000455196
Original member Current member EBI ENST00000564979.5 ENSP00000455624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564979.5Link to Ensembl Protein Viewer:ENSP00000455624.1Re-query CCDS DB by Nucleotide ID:ENST00000564979Re-query CCDS DB by Protein ID:ENSP00000455624
Original member Current member EBI ENST00000616445.4 ENSP00000482870.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616445.4Link to Ensembl Protein Viewer:ENSP00000482870.1Re-query CCDS DB by Nucleotide ID:ENST00000616445Re-query CCDS DB by Protein ID:ENSP00000482870
Original member Current member NCBI NM_001282062.1 NP_001268991.1 Accepted alive Link to Nucleotide Sequence:NM_001282062.1Link to Protein Sequence:NP_001268991.1Re-query CCDS DB by Nucleotide ID:NM_001282062Re-query CCDS DB by Protein ID:NP_001268991Link to BLAST:NP_001268991.1
Original member Current member NCBI NM_001282063.2 NP_001268992.1 Accepted alive Link to Nucleotide Sequence:NM_001282063.2Link to Protein Sequence:NP_001268992.1Re-query CCDS DB by Nucleotide ID:NM_001282063Re-query CCDS DB by Protein ID:NP_001268992Link to BLAST:NP_001268992.1
Original member Current member NCBI NM_001282068.2 NP_001268997.1 Accepted alive Link to Nucleotide Sequence:NM_001282068.2Link to Protein Sequence:NP_001268997.1Re-query CCDS DB by Nucleotide ID:NM_001282068Re-query CCDS DB by Protein ID:NP_001268997Link to BLAST:NP_001268997.1
Original member Current member NCBI NM_003586.3 NP_003577.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003586.3Link to Protein Sequence:NP_003577.2Re-query CCDS DB by Nucleotide ID:NM_003586Re-query CCDS DB by Protein ID:NP_003577Link to BLAST:NP_003577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268991.1 400 Q14183-1 400 100% 0 0
NP_001268992.1 400 Q14183-1 400 100% 0 0
NP_001268997.1 400 Q14183-1 400 100% 0 0
NP_003577.2 400 Q14183-1 400 100% 0 0

Chromosomal Locations for CCDS 10666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30006186 30006331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30006413 30006509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30006596 30006677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30006785 30006948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30007031 30007090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30007173 30007299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30008996 30009105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30009202 30009276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30009478 30009557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30009961 30010222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGGGGCCGCAGGGGCGATCGCATGACCATCAACATCCAGGAGCACATGGCCATCAACGTGTGCCCCG
GGCCCATCCGGCCCATCCGCCAGATCTCTGACTACTTCCCCCGGGGACCAGGACCTGAAGGGGGCGGCGG
GGGCGGCGGGGAGGCCCCCGCCCATCTGGTCCCCCTGGCTCTGGCCCCCCCTGCAGCCCTCCTTGGGGCC
ACCACGCCTGAGGATGGTGCGGAGGTGGACAGCTATGACTCGGATGATGCCACCGCCCTAGGCACGCTGG
AGTTTGACCTTCTCTACGACCGGGCCTCCTGCACTCTGCACTGTAGCATCCTCAGGGCCAAGGGCCTCAA
GCCCATGGATTTCAATGGCCTCGCCGACCCCTACGTCAAGCTGCACTTGCTGCCTGGAGCCTGTAAGGCC
AATAAGCTAAAAACGAAGACTCAGAGGAACACACTGAATCCCGTGTGGAATGAGGACCTGACTTACAGCG
GGATCACAGATGACGACATCACGCACAAGGTGCTCAGGATCGCCGTCTGTGATGAGGACAAGCTGAGTCA
CAATGAGTTTATTGGGGAGATCCGCGTGCCCCTCCGCCGCCTCAAGCCTTCGCAGAAGAAGCATTTTAAC
ATCTGCCTCGAGCGCCAGGTCCCGCTGGCGTCCCCCTCTTCCATGTCAGCGGCGCTGAGGGGCATCTCCT
GTTATCTGAAGGAGTTGGAGCAGGCGGAGCAGGGGCAGGGGCTGCTGGAGGAGCGTGGCCGCATCCTGCT
GAGTCTCAGCTACAGCTCGCGGCGCCGGGGACTGCTGGTAGGCATCTTGCGCTGCGCCCATCTGGCTGCC
ATGGACGTCAACGGTTACTCGGACCCCTACGTCAAGACGTACCTGAGGCCCGATGTGGACAAGAAATCCA
AGCATAAGACGTGTGTGAAGAAGAAGACTCTCAACCCAGAATTTAACGAGGAGTTTTTCTACGAGATAGA
GCTCTCCACTCTGGCCACCAAGACCCTGGAAGTCACCGTCTGGGACTATGACATTGGCAAATCCAATGAC
TTCATTGGTGGCGTGTCCCTGGGGCCAGGTGCCCGAGGCGAGGCTCGGAAGCACTGGAGTGACTGCCTGC
AGCAGCCGGACGCAGCCCTGGAGCGCTGGCACACCCTGACCAGTGAGCTGCCCCCTGCGGCCGGGGCTCT
GTCCTCAGCCTGA

Translation (400 aa):
MRGRRGDRMTINIQEHMAINVCPGPIRPIRQISDYFPRGPGPEGGGGGGGEAPAHLVPLALAPPAALLGA
TTPEDGAEVDSYDSDDATALGTLEFDLLYDRASCTLHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKA
NKLKTKTQRNTLNPVWNEDLTYSGITDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRLKPSQKKHFN
ICLERQVPLASPSSMSAALRGISCYLKELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAA
MDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEIELSTLATKTLEVTVWDYDIGKSND
FIGGVSLGPGARGEARKHWSDCLQQPDAALERWHTLTSELPPAAGALSSA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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