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Report for CCDS7413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7413.1 Public Homo sapiens 10 PCGF5 24 110 108 CCDS HistoryNCBI Gene:84333Re-query CCDS DB by CCDS ID:7413.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336126.6 ENSP00000337500.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336126.6Link to Ensembl Protein Viewer:ENSP00000337500.5Re-query CCDS DB by Nucleotide ID:ENST00000336126Re-query CCDS DB by Protein ID:ENSP00000337500
Original member Current member EBI ENST00000543648.5 ENSP00000445704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543648.5Link to Ensembl Protein Viewer:ENSP00000445704.1Re-query CCDS DB by Nucleotide ID:ENST00000543648Re-query CCDS DB by Protein ID:ENSP00000445704
Original member Current member EBI ENST00000614189.4 ENSP00000479492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614189.4Link to Ensembl Protein Viewer:ENSP00000479492.1Re-query CCDS DB by Nucleotide ID:ENST00000614189Re-query CCDS DB by Protein ID:ENSP00000479492
Original member Current member NCBI NM_001256549.2 NP_001243478.1 Accepted alive Link to Nucleotide Sequence:NM_001256549.2Link to Protein Sequence:NP_001243478.1Re-query CCDS DB by Nucleotide ID:NM_001256549Re-query CCDS DB by Protein ID:NP_001243478Link to BLAST:NP_001243478.1
Original member Current member NCBI NM_001257101.2 NP_001244030.1 Accepted alive Link to Nucleotide Sequence:NM_001257101.2Link to Protein Sequence:NP_001244030.1Re-query CCDS DB by Nucleotide ID:NM_001257101Re-query CCDS DB by Protein ID:NP_001244030Link to BLAST:NP_001244030.1
Original member Current member NCBI NM_032373.5 NP_115749.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032373.5Link to Protein Sequence:NP_115749.2Re-query CCDS DB by Nucleotide ID:NM_032373Re-query CCDS DB by Protein ID:NP_115749Link to BLAST:NP_115749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243478.1 256 Q86SE9-1 256 100% 0 0
NP_001244030.1 256 Q86SE9-1 256 100% 0 0
NP_115749.2 256 Q86SE9-1 256 100% 0 0

Chromosomal Locations for CCDS 7413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 91222872 91222983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91240484 91240580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91248505 91248560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91248665 91248724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91251292 91251440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91261326 91261424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91264431 91264520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91271638 91271697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91278269 91278316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCTACCCAAAGGAAACACTTGGTGAAAGATTTTAATCCTTACATTACCTGCTATATCTGTAAAGGGT
ATCTGATCAAGCCAACAACAGTGACGGAATGCCTCCATACATTCTGTAAGACTTGTATTGTTCAGCACTT
TGAAGATAGCAATGATTGCCCAAGGTGTGGCAACCAAGTTCATGAGACAAATCCATTAGAAATGTTGAGG
TTGGACAATACATTAGAGGAAATTATATTTAAGCTGGTCCCTGGACTACGAGAACAAGAACTTGAGCGTG
AATCTGAATTTTGGAAGAAAAATAAGCCTCAAGAAAATGGACAAGATGATACTTCAAAAGCTGACAAACC
GAAAGTAGATGAAGAAGGTGATGAAAATGAAGATGATAAAGATTATCACAGAAGTGACCCACAAATTGCT
ATCTGTCTAGATTGTTTACGAAATAATGGGCAATCAGGGGACAATGTAGTAAAGGGTTTAATGAAGAAAT
TCATTCGATGTTCTACACGTGTAACTGTGGGAACTATTAAAAAATTTCTAAGTTTAAAACTAAAACTTCC
AAGTTCTTATGAGTTGGATGTGCTGTGCAATGGTGAAATTATGGGGAAGGATCATACTATGGAATTCATC
TACATGACAAGATGGCGACTAAGAGGCGAAAACTTTCGGTGTCTGAACTGCTCAGCTTCGCAAGTCTGCT
CTCAGGATGGCCCTTTGTATCAGTCATACCCTATGGTACTGCAGTATCGACCAAGAATTGATTTCGGTTA
G

Translation (256 aa):
MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLR
LDNTLEEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKADKPKVDEEGDENEDDKDYHRSDPQIA
ICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFI
YMTRWRLRGENFRCLNCSASQVCSQDGPLYQSYPMVLQYRPRIDFG


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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