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Report for CCDS10402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10402.1 Public Homo sapiens 16 FAM234A 24 110 108 CCDS HistoryNCBI Gene:83986Re-query CCDS DB by CCDS ID:10402.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301678.7 ENSP00000301678.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301678.7Link to Ensembl Protein Viewer:ENSP00000301678.3Re-query CCDS DB by Nucleotide ID:ENST00000301678Re-query CCDS DB by Protein ID:ENSP00000301678
Original member Current member EBI ENST00000399932.8 ENSP00000382814.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399932.8Link to Ensembl Protein Viewer:ENSP00000382814.3Re-query CCDS DB by Nucleotide ID:ENST00000399932Re-query CCDS DB by Protein ID:ENSP00000382814
Original member Current member NCBI NM_001284497.2 NP_001271426.1 Accepted alive Link to Nucleotide Sequence:NM_001284497.2Link to Protein Sequence:NP_001271426.1Re-query CCDS DB by Nucleotide ID:NM_001284497Re-query CCDS DB by Protein ID:NP_001271426Link to BLAST:NP_001271426.1
Original member Current member NCBI NM_032039.4 NP_114428.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032039.4Link to Protein Sequence:NP_114428.1Re-query CCDS DB by Nucleotide ID:NM_032039Re-query CCDS DB by Protein ID:NP_114428Link to BLAST:NP_114428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271426.1 552 Q9H0X4-1 552 100% 0 0
NP_114428.1 552 Q9H0X4-1 552 100% 0 0

Chromosomal Locations for CCDS 10402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 254414 254681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 259483 259599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 259969 260160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 261384 261514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 262093 262225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 262424 262553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 263262 263402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 263700 263775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 264016 264171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 264614 264716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 264811 265022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGTTGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAA
ATCTGGGAAATCCATCAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTG
CCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATC
CCGTGTCCAGACCGGCCGGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTGTTATCTATGACT
TTCTGGCTGTGGATGATATAAACGGGGACAGGATCCAAGATGTTCTTTTTCTTTATAAAAACACCAACAG
CAGCAACAATTTCAGCCGATCCTGTGTGGACGAAGGCTTTTCCTCTCCCTGCACCTTTGCAGCTGCTGTG
TCGGGGGCCAACGGCAGCACGCTCTGGGAGAGACCTGTGGCCCAAGACGTGGCCCTCGTGGAGTGTGCTG
TGCCCCAGCCAAGAGGCAGTGAGGCACCTTCTGCCTGCATCCTGGTGGGCAGACCCAGTTCTTTCATTGC
AGTCAACTTGTTCACAGGGGAAACCCTGTGGAACCACAGCAGCAGCTTCAGCGGGAATGCGTCCATCCTG
AGCCCTCTGCTGCAGGTGCCTGATGTGGACGGCGATGGGGCCCCAGACCTGCTGGTTCTCACCCAGGAGC
GGGAGGAGGTTAGTGGCCACCTCTACTCCGGCAGCACCGGGCACCAGATTGGCCTCAGAGGCAGCCTTGG
TGTGGACGGGGAAAGTGGCTTCCTCCTTCACGTCACCAGGACAGGTGCCCACTACATCCTCTTTCCCTGC
GCAAGCTCCCTCTGCGGCTGCTCTGTGAAGGGTCTCTACGAGAAGGTGACCGGGAGCGGCGGCCCGTTCA
AGAGTGACCCGCACTGGGAGAGCATGCTCAATGCCACCACCCGCAGGATGCTTTCCCACAGCTCTGGAGC
AGTGCGCTACCTGATGCATGTCCCAGGGAACGCCGGTGCAGATGTGCTTCTTGTGGGCTCAGAGGCCTTC
GTGCTGCTGGACGGGCAGGAGCTGACGCCTCGCTGGACACCCAAGGCAGCCCATGTCCTGAGAAAACCCA
TCTTCGGCCGCTACAAACCAGACACCTTGGCTGTAGCCGTTGAAAACGGAACTGGCACCGACAGACAGAT
CCTGTTTCTGGACCTTGGCACTGGAGCCGTCCTGTGTAGCCTAGCCCTCCCGAGCCTCCCTGGGGGTCCA
CTGTCCGCCAGCCTGCCGACCGCAGACCACCGCTCAGCCTTCTTCTTCTGGGGCCTCCACGAGCTGGGGA
GCACCAGCGAGACGGAGACCGGGGAGGCCCGGCACAGCCTGTACATGTTCCACCCCACCCTGCCGCGCGT
GCTGCTGGAGCTGGCCAATGTCTCTACCCACATTGTCGCCTTTGACGCCGTCCTGTTTGAGCCAAGCCGC
CACGCCGCCTACATCCTTCTGACAGGCCCGGCAGACTCAGAGGCACCCGGCCTGGTCTCTGTGATCAAGC
ACAAGGTGCGGGACCTTGTCCCAAGCAGCAGGGTGGTCCGCCTGGGTGAGGGTGGGCCAGACAGTGACCA
AGCCATCAGGGACCGGTTCTCCCGGCTGCGGTACCAGAGTGAGGCGTAG

Translation (552 aa):
MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFVVSFVI
PCPDRPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRSCVDEGFSSPCTFAAAV
SGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVGRPSSFIAVNLFTGETLWNHSSSFSGNASIL
SPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPC
ASSLCGCSVKGLYEKVTGSGGPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAF
VLLDGQELTPRWTPKAAHVLRKPIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGP
LSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVAFDAVLFEPSR
HAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIRDRFSRLRYQSEA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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